Testing differences in cell type proportions from single-cell data.

R scripts to reproduce analyses in our paper comparing clustering methods for high-dimensional cytometry data

R package for pre-processing of mass and flow cytometry data

Huge-scale, high-performance flow cytometry clustering in Julia

R package for interactive visualization and analysis of single-cell data

Integration of multi-batch cytometry datasets

Pipeline for analysing and visualising CyTOF datasets, with a focus on PTM signalling networks.

Accurate and Efficient Simulation of CyTOF data

A Python package for dimension reduction and evaluation workflows with CyTOF data.

HDStIM: High Dimensional Stimulation Immune Mapping

Analysis and visualisation single-cell proteomic data (CyTOF)

Fast auto-cleanup of CyTOF data

Profilling of Peripheral Blood Mononuclear Cells using CyTOF

R Script for reading CyTOF or flow cytometry data (FCS) and generating plots like Cytobank

Plots log histograms of FCS files like CyTOF's PlotViewer program

R script for summarising paramater / channel intensity from flow or mass cytometry data

Scripts to perform automated pipetting of (1) Barcode Production & Aliquoting and (2) a Robotic Extraction Protocol of Organoids

CyTOF data exploration and analysis pipeline using binary classification followed by clustering

Code for analysis of single cell signaling network kinetics from flow cytometry (CyTOF) datasets