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Jan 13, 2022 - HTML
deseq2
Here are 91 public repositories matching this topic...
RNA-seq workflow using STAR and DESeq2
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Mar 25, 2024 - Python
Brings bulk and pseudobulk transcriptomics to the tidyverse
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May 10, 2024 - R
Transcript quantification import for modular pipelines
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Mar 23, 2024 - R
Statistical Analysis of RNA-Seq Tools
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Jun 13, 2023 - R
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Mar 23, 2021 - R
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
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May 9, 2024 - Nextflow
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
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May 3, 2024 - R
Differential gene expression analysis and pathway analysis of RNAseq data
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May 7, 2024 - Nextflow
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
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Apr 19, 2020 - HTML
This tutorial is created for educational purpose
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Dec 12, 2023 - R
a web-based R shiny application that wraps DESeq2 R package
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Apr 19, 2020 - R
A quick recap of widely used differential analyses methods in R for RNA-seq experiments
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Mar 12, 2020
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
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Dec 5, 2022 - R
Differential expression analysis: DESeq2, edgeR, limma. Realized in python based on rpy2
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May 7, 2021 - Jupyter Notebook
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
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May 7, 2023 - R
An application for exploring and visualizing differential gene expression data created with DESeq2
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Apr 10, 2024 - Vue
Scripts to run differential expression analysis using DESeq2 package
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May 11, 2019 - R
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