deseq2
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Tools to count repeat elements form RepeatMasker (RMSK) and infer the enrichment of repeats
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Sep 29, 2016 - R
Differential expression analysis in R for RNA sequence reads of fission yeast.
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Apr 20, 2018 - R
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Apr 25, 2018 - R
Iteratively randomly pooling scRNA-seq expressing a given gene from different numbers of cells and running DESeq2 with fdrtools correction to determine how many times which genes come out as enriched with said gene
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Nov 9, 2018 - Python
A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma
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Dec 8, 2018 - HTML
Code for processing and analysis of TAGseq data in "The Effects of IKKβ Inhibition on Early NF-κB Activation and Transcription of Downstream Genes". Modified repository from https://github.com/z0on/tag-based_RNAseq.
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Apr 9, 2019 - R
Scripts to run differential expression analysis using DESeq2 package
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May 11, 2019 - R
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Aug 28, 2019 - Jupyter Notebook
R scripts used for the analysis of microbiomes associated with stony coral tissue loss disease (SCTLD) in the Florida Reef Tract
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Oct 14, 2019 - R
Project files for the Differential Expression Analysis of RNASeq data for Weiping Cao
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Feb 28, 2020 - R
A quick recap of widely used differential analyses methods in R for RNA-seq experiments
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Mar 12, 2020
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