RNA-seq workflow using STAR and DESeq2
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Updated
Mar 25, 2024 - Python
RNA-seq workflow using STAR and DESeq2
Statistical Analysis of RNA-Seq Tools
Transcript quantification import for modular pipelines
Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
Brings bulk and pseudobulk transcriptomics to the tidyverse
Differential gene expression analysis and pathway analysis of RNAseq data
This tutorial is created for educational purpose
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
Scripts to run differential expression analysis using DESeq2 package
a web-based R shiny application that wraps DESeq2 R package
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Probabilistic outlier identification for bulk RNA sequencing data
A quick recap of widely used differential analyses methods in R for RNA-seq experiments
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