Version 5 of the CAFE phylogenetics software
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Updated
Apr 17, 2023 - C++
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gene-family
Here are 4 public repositories matching this topic...
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
bioinformatics
genomics
comparative-genomics
genera
phylostratigraphy
gene-family
gene-age
founder-gene
founder-events
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Updated
Apr 3, 2024 - Shell
Statistical analysis of gene family evolution using phylogenetic birth-death processes and WGD inference using rjMCMC
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Updated
Nov 24, 2020 - Julia
Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
bioinformatics
annotation
clustering
biology
gene-families
bioinformatics-analysis
proteome-clustering
downstream-analysis
orthomcl
pangenome
singletons
plasmodium
duplicates-removal
gene-family
binary-matrix
accessory-genes
coregenome
pangenome-inference
pangenome-pipeline
count-matrix
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Updated
Feb 21, 2022 - Python
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