A python package to facilitate identity-by-descent-based analysis
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Updated
May 29, 2024 - Python
A python package to facilitate identity-by-descent-based analysis
Statistical inference of recent positive selection using IBD segments
Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.
a Rust crate designed to facilitate the analysis of rare-variant sharing and identity-by-descent (IBD) sharing.
Gradient descent for estimating inbreeding spatial coefficients from pairwise-IBD estimates
Simulate patterns of DNA sharing between pedigree members
A tool for prioritising identity-by-descent (IBD) variants in Whole Genome Sequencing (WGS) data from families with rare heritable diseases.
Method to estimate the age and intensity of recent bottlenecks/founder events, using genotype data and a recombination map.
An online tool for simulating and visualising genetic sharing (identity-by-descent) between pedigree members. Powered by the R package ibdsim2.
GWAS Pre-Processing Pipeline
Repository for code used in the study "Patterns of population structure and complex haplotype sharing at continental and local scales in field isolates of the green alga Chlamydomonas reinhardtii"
efficient, accurate, and scalable IBD segment detection with unphased genotype data
Exploratory analysis for donor-recipient whole genome sequences
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