PAR2 Activation and calcium signaling Reaction Model in PySB

project about measuring size and shape of gold nanoparticles and nanorods and image segmantation

Depolarized Dynamic Light Scattering data analysis in python. Used to find aspect ratio of non-spherical nanoparticles using oblate, prolate, and cylinder methods.

The Nanocluster interpolation Scheme Program (NISP) is designed to perform an interpolation scheme that gives idea of the types of icosahedral, decahedral, and octahedral clusters that may exist at selected sizes.

Analyze two-component nanoparticle properties for classical molecular dynamics simulations

eNanoMapper TTL for ACS Nano paper

This repository contains examples of genetic algorithm optimisations using the Organisms program that can be run on Jupyter. This can be run either on your computer or live on the web through Binder

C++ template library for Discrete Element Method (DEM) simulations

PBPK Modeling For Therapeutic Nanoparticles Loaded With Drug

Using deep learning methods to recognize and measure silica spheres in SEM pictures.

Scripts to compute field enhancements of plasmonic nanostrucutres, mirrored from https://gitlab.com/theoretical-chemistry-jena/quantum-dynamics/plasmonic-meep/

Repository for the KCN etching of gold nanorods paper

DecomNano is a heterogeneity analysis of bimetallic nanoparticles using coordination numbers obtained from XAS analysis.

Paper on how to supress background while imaging gold nanorods through the use of the anti-Stokes emission.

This is a computational exercise for learning about silver nanoprisms and why their colour is related to their diameter. Runs in Google Colab and uses Python3. Designed for high school students.

Semi-supervised VAE for data with the rotational disorder

A molecular dynamics approach to study the permeation of nanoparticles through lipid bilayer

High throughput analysis of NTA data to evaulate particle interaction. Also gives results of general NTA analysis

NanoTrackJ is an ImageJ/Fiji plugin to characterize the size of nanoparticles by its diffusion trajectories.