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Jun 14, 2024 - R
spatial-transcriptomics
Here are 138 public repositories matching this topic...
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
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Jun 14, 2024 - R
A Julia package for single cell and spatial data analysis
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Jun 14, 2024 - Julia
DANCE: a deep learning library and benchmark platform for single-cell analysis
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Jun 14, 2024 - Python
Spatial dissimilarity analysis in single cells
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Jun 13, 2024 - C
Build the relationship between SVGs
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Jun 13, 2024 - Python
From geospatial to spatial -omics
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Jun 14, 2024 - R
The pipeline to process Novaseq dataset, from fastq to nge.
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Jun 12, 2024 - Python
Technology-invariant pipeline for spatial omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
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Jun 14, 2024 - Python
Spatial Single Cell Analysis in Python
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Jun 14, 2024 - Python
Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis
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Jun 11, 2024 - R
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
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Jun 10, 2024 - R
Spatially-aware quality control for spatial transcriptomics
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Jun 10, 2024 - R
Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab
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Jun 10, 2024 - HTML
R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
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Jun 8, 2024 - R
A Python package for the Scalale and accurate identification condition-relevant niches from spatial -omics data.
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Jun 8, 2024 - Jupyter Notebook
Spatial-Linked Alignment Tool
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Jun 8, 2024 - Python
AESTETIK: AutoEncoder for Spatial Transcriptomics Expression with Topology and Image Knowledge
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Jun 7, 2024 - Python
HEST library (H&E and Spatial Transcriptomics framework)
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Jun 14, 2024 - Python
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