msprime

msprime is a population genetics simulator based on tskit. Msprime can simulate random ancestral histories for a sample of individuals (consistent with a given demographic model) under a range of different models and evolutionary processes. Msprime can also simulate mutations on a given ancestral history (which can be produced by msprime or other programs supporting tskit) under a variety of genome sequence evolution models.

Please see the documentation for more details, including installation instructions.

Name		Name	Last commit message	Last commit date
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.circleci		.circleci
.github/workflows		.github/workflows
benchmarks		benchmarks
containers		containers
data		data
docs		docs
git-submodules		git-submodules
lib		lib
msprime		msprime
requirements		requirements
tests		tests
.codecov.yml		.codecov.yml
.flake8		.flake8
.gitignore		.gitignore
.gitmodules		.gitmodules
.mergify.yml		.mergify.yml
.pre-commit-config.yaml		.pre-commit-config.yaml
CHANGELOG.md		CHANGELOG.md
CITATION.md		CITATION.md
LICENSE		LICENSE
MANIFEST.in		MANIFEST.in
Makefile		Makefile
README.md		README.md
algorithms.py		algorithms.py
asv.conf.json		asv.conf.json
lwt_interface		lwt_interface
msp_dev.py		msp_dev.py
mspms_dev.py		mspms_dev.py
pyproject.toml		pyproject.toml
setup.cfg		setup.cfg
setup.py		setup.py
stress_lowlevel.py		stress_lowlevel.py
verification.py		verification.py

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