GitHub - uriba/proteome-analysis: stores the dataset and ipython-notebook scripts to process some proteome data

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 285 Commits
authorea-export		authorea-export
Ecoli_19_Conditions_Protein_Levels_Schmidtetal_031013.csv		Ecoli_19_Conditions_Protein_Levels_Schmidtetal_031013.csv
Figures7-trieste.pdf		Figures7-trieste.pdf
Perspective on gene regulation 11.docx		Perspective on gene regulation 11.docx
U00096.2.gbk		U00096.2.gbk
Untitled0.ipynb		Untitled0.ipynb
Untitled1.ipynb		Untitled1.ipynb
Untitled2.ipynb		Untitled2.ipynb
all_ecoli_genes.txt		all_ecoli_genes.txt
analysis.py		analysis.py
cerevisae_data.tsv		cerevisae_data.tsv
coli_data.csv		coli_data.csv
eco_Valgepea_2013_11.csv		eco_Valgepea_2013_11.csv
eco_Valgepea_2013_21.csv		eco_Valgepea_2013_21.csv
eco_Valgepea_2013_31.csv		eco_Valgepea_2013_31.csv
eco_Valgepea_2013_40.csv		eco_Valgepea_2013_40.csv
eco_Valgepea_2013_48.csv		eco_Valgepea_2013_48.csv
eco_hierarchy.tms		eco_hierarchy.tms
eco_uniprot_mapping.csv		eco_uniprot_mapping.csv
ecoli_Valgepea_et_al_2013.csv		ecoli_Valgepea_et_al_2013.csv
emulation.py		emulation.py
figure-1-normal.svg		figure-1-normal.svg
figure1.svg		figure1.svg
funcsHeinemann.tex		funcsHeinemann.tex
funcsPeebo.tex		funcsPeebo.tex
funcsValgepea.tex		funcsValgepea.tex
hierarchy_standardised.tms		hierarchy_standardised.tms
hui.xlsx		hui.xlsx
interim-report.tex		interim-report.tex
library.bib		library.bib
main.tex		main.tex
matthias2.csv		matthias2.csv
poster-abstract.txt		poster-abstract.txt
presentation.py		presentation.py
presentation.tex		presentation.tex
proteome-analysis.ipynb		proteome-analysis.ipynb
proteome-analysis.py		proteome-analysis.py
schmidt_prot_desc.csv		schmidt_prot_desc.csv
tables.tex		tables.tex
trieste-poster.tex		trieste-poster.tex
valgepea.csv		valgepea.csv
valgepea2.csv		valgepea2.csv
valgepea_generate_csv.py		valgepea_generate_csv.py