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viash

Welcome to the Viash organisation, the place where Viash-related code and content is maintained.

What you'll find

You'll find here the repository for the Viash source code together with the source of the documentation site and some additional resources:

  • Github Actions for simplifying Viash-related CI tasks.
  • The source of viashpy for facilitating interaction with Viash from Python, useful for defining Viash component unit-tests for instance.
  • The civ6 pipeline as a best-practice example Viash-enabled pipeline using Civilization 6 as a background.

How it's used

Viash is currently used in a variaty of projects, the open source ones are:

  • Open Pipelines: components and pipelines for single-cell (multi-omics) data
  • Open Problems: a benchmarking framework for single-cell methods
  • LuciusOperations: a devops toolbox for managing a computational REST backend.

Reach out!

There are other applications and some additional internal resources, please reach out if you are eager to know more about those.

Pinned

  1. viash viash Public

    script + metadata = standalone component

    Scala 35 2

  2. viash_project_template viash_project_template Public template

    A template for Viash projects

    Nextflow 1 3

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