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Welcome to the libpll wiki! You will find here more documentation material regarding libpll. Including, but not limited to, theoretical background, use cases, possible enhancements and a guide on how to contribute to libpll.

Contributing to libpll

API Reference

A Beginner's guide to libpll

• Managing libpll partition instances
  • Creating a partition instance
  • Destroying a partition instance
• Setting model parameters
  • Setting CLV vectors at tips from sequences and maps
  • Setting CLV vectors manually
  • Setting base frequencies
• Updating transition probability matrices