These are the scripts that were used for the analysis:
Harris, ZN, Kovacs, LG, Londo, JP. RNA-seq-based genome annotation and identification of long-noncoding RNAs in the grapevine cultivar ‘Riesling’. BMC Genomics. 18:937 (2017).
All scripts have been modified to remove computer sensitive information (paths) and user names/ emails in the case of XSEDE Resource scripts.