Core flow cytometry infrastructure

cytofkitlab: a fork of cytofkit, an integrated flow/mass cytometry data analysis pipeline

Estimate Stain Index for single stained cytometry files.

flowStats: algorithms for flow cytometry data analysis using BioConductor tools

R package for differential discovery analyses in high-dimensional cytometry data

R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

CytofRUV: Removing unwanted variation to integrate multiple CyTOF datasets.

Risk Assessment Population and Identification

R implementation of Predictive Power Score

An R package of model based clustering for flow and mass cytometry data

Create, read and write GEXF (Graph Exchange XML Format) graph files (used in Gephi and others) in R.