Merge branch 'master' of github.com:LanguageMachines/PICCL into master

LanguageMachines · Aug 19, 2020 · 102dbe2 · 102dbe2
2 parents d669784 + 26b46e5
commit 102dbe2
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/ticcl.nf b/ticcl.nf
@@ -421,6 +421,7 @@ process chainer {
     /*
         Find more distant variants (variants-of-variants are variants too)
     */
+    publishDir params.outputdir, mode: 'copy', overwrite: true //publish the output for the end-user to see (rather than deleting this intermediate output)
 
     input:
     file rankedlist from rankedlist
@@ -458,6 +459,7 @@ if (params.chainclean) {
         /*
             Clean chain file, taking into account splits and merges
         */
+        publishDir params.outputdir, mode: 'copy', overwrite: true //publish the output for the end-user to see (rather than deleting this intermediate output)
 
         input:
         file rankedlist from rankedlist_chained