v0.6.0
This release introduces some major refactoring, many fixes, and some new tools:
- Upgraded to use stam-rust v0.11.0
stam align
: tool that aligns identical parts of two (sub)texts using Smith Waterman/Needleman Wunsch. Outputs a transposition following the STAM Transpose specification.stam transpose
: new tool implementing the ability to map annotations from one coordinate system to another, given a transposition (e.g. like produced bystam align
).stam export
: added--alignments
parameter that outputs transpositions in TSV formatstam batch
orstam shell
: a tool to invoke stam tools subcommands in sequence. his is a good way to avoid the initialization/serialisation overhead that would normally come from invoking commands one-by-one on the command line. It also works for (limited) interactive use.- Loading and merging multiple annotation stores was revised, fixed and applied more consistently across all tools.
stam view
: Fixes in newline visualisation and added--collapse
parameter to hide tags when first loading html.
Removed:
stam save
is no longer needed, just usestam init
/stam annotate
.