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Merge branch 'devel'
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jasenfinch committed Feb 13, 2023
2 parents dcf5f12 + 3aea686 commit c79a4de
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Showing 4 changed files with 12 additions and 5 deletions.
2 changes: 1 addition & 1 deletion DESCRIPTION
@@ -1,6 +1,6 @@
Package: grover
Title: Web API Framework for Mass Spectrometry Data Transfer
Version: 1.1.1
Version: 1.1.2
Authors@R:
person(given = "Jasen",
family = "Finch",
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2 changes: 2 additions & 0 deletions NAMESPACE
Expand Up @@ -43,6 +43,7 @@ importFrom(crayon,blue)
importFrom(crayon,bold)
importFrom(crayon,red)
importFrom(crayon,yellow)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_rows)
importFrom(dplyr,filter)
importFrom(dplyr,mutate)
Expand Down Expand Up @@ -82,6 +83,7 @@ importFrom(plumber,serializer_content_type)
importFrom(progress,progress_bar)
importFrom(purrr,map)
importFrom(purrr,map_chr)
importFrom(purrr,map_dfr)
importFrom(purrr,map_lgl)
importFrom(purrr,walk)
importFrom(rawrr,readFileHeader)
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4 changes: 4 additions & 0 deletions NEWS.md
@@ -1,3 +1,7 @@
# grover 1.1.2

* Ensure that the run information tibble returned by [`grover::runInfo`](https://jasenfinch.github.io/grover/reference/info.html) is ordered by .RAW file name.

# grover 1.1.1

* Ensure that [`grover::convertDirectory`](https://jasenfinch.github.io/grover/reference/convert.html) returns the file paths of the converted .mzML files for all the of the raw files in the specified directory.
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9 changes: 5 additions & 4 deletions R/client-info.R
Expand Up @@ -57,8 +57,8 @@ setMethod('sampleInfo',signature = 'GroverClient',
})

#' @rdname info
#' @importFrom dplyr bind_rows rename
#' @importFrom purrr map
#' @importFrom dplyr bind_rows rename arrange
#' @importFrom purrr map map_dfr
#' @importFrom httr timeout
#' @export

Expand Down Expand Up @@ -87,14 +87,15 @@ setMethod('runInfo',signature = 'GroverClient',
pb$tick(0)

run_info <- files %>%
purrr::map_dfr(~{
map_dfr(~{
suppressMessages({
sample_info <- sampleInfo(
grover_client = grover_client,
instrument = instrument,
directory = directory,
file = .x)
})
}) %>%
arrange(`RAW file`)

pb$tick()

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