grover 1.1.3

• Ensure that all vectors returned from functions used to list available information, such as grover::listFiles, are sorted client-side.

grover 1.1.2

• Ensure that the run information tibble returned by grover::runInfo is ordered by RAW file name.

grover 1.1.1

• Ensure that grover::convertDirectory returns the file paths of the converted .mzML files for all the of the raw files in the specified directory.

grover 1.1.0

• Added the exclude argument to grover::convertDirectory and grover::runInfo to exclude raw files matching the specified patterns.

• grover::runInfo now collates the sample information client-side and so the time_out argument has been removed.

• The grover::groverAPI log_dir and temp_dir argument directories are now created recursively if they do not already exist.

• Improved the naming of the grover::groverAPI log files to include the current system date.

grover 1.0.9

• The grover::groverAPI log_dir and temp_dir argument directories are now created if they do not already exist.

• The grover::groverAPI temp_dir argument default is now tempdir().

• grover::extant now returns TRUE if the specified API is accessible and FALSE if not.

• The argument overwrite has now been added to grover::convertFile and grover::convertDirectory to enable the overwriting of local mzML files with the same file name as the raw files to be converted.

• Removed the build_vignettes argument from the installation instructions in the package README as the package documentation is available online from https://jasenfinch.github.io/grover.

• Removed the Introduction vignette as the majority of this information was duplicated in the package README.

grover 1.0.8

• Added Bioconductor package rawrr as a bioc remote to ensure the package can be installed correctly using pak and renv.

grover 1.0.7

• Added biocViews field to the DESCRIPTION to ensure the rawrr Bioconductor dependency is installed automatically.

• Fixed grover::converFile error when more than two options are supplied to the args parameter.

grover 1.0.6

• grover::converFile creates the output directory if it doesn't already exist.

• converted files now correctly zipped by grover::converFile to ensure they are readable by the mzR package.

grover 1.0.5

• File conversion methods grover::converFile and grover::convertDirectory now return the file path of the converted file.

• Zipping of converted files for reduced storage requirements can now be specified using the zip argument and is now the default of the conversion methods such as grover::converFile.

• Added grover::version to query the version number of a grover API.

• grover::groverAPI now ensures that the specified temp_dir is created if not already extant.

grover 1.0.4

• grover::conversionArgsPeakPick fix to ensure conversion argument is correctly passed to msconverteR.