Releases: jasenfinch/metaboMisc
metaboMisc 0.6.4
-
Added an
export()
method for theAnalysisData
class. -
Fixed a bug where file names were incorrectly converted from .raw to .mzML if "raw" was included in the file name alongside the extension.
metaboMisc 0.6.3
suitableParallelPlan()
is now re-exported from thejfmisc
package. This now includes theRAM_per_worker
andproportion_max_workers
arguments to improve usability.
metaboMisc 0.6.2
-
Fixed miss injection and batch correction detection for GC-MS data sets processed using xcms.
-
Fixed the feature summary for GC-MS data sets processed using xcms.
metaboMisc 0.6.1
- Fix the missing
name
column in tables returned fromconvertSampleInfo()
.
metaboMisc 0.6.0
-
injOrder
is now the default column for sample indexes returned fromdetectMissInjections()
. -
The returned miss injection indexes are now sorted.
-
Fixed the
MetaboProfile
S4 classexport()
method for GC-MS techniques. -
Added the
strategy
andworkers
arguments insuitableParallelPlan()
to allow the manual selection of parallel options. -
Added an
export()
method for theConstruction
S4 class. -
detectModellingParameters()
now returns parameters for unsupervised random forest when a single class response is specified. -
Added
miss_injections
andbatch_correction
arguments todetectPretreatmentParameters()
to specify if miss injection detection and/or batch correction detection is performed. -
The
RSDthresh
parameter is now set bydetectPretreatmentParameters()
for theMetaboProfile
S4 class depending on the technique used. -
Miss injections are now detected below a percentage threshold of the median total ion count in
detectMissInjections()
. -
Added the
isotopic_adducts
argument toreduce()
to allow the removal of m/z features assigned isotopic adducts. -
The row order of the output of
convertSampleInfo()
will now always match the row order of the input. -
Added the
user_text
argument toconvertSampleInfo()
to denote the column names for theUser text
fields.
metaboMisc 0.5.11
exportCSV()
now recursively creates the destination directory if it does not already exist.
metaboMisc 0.5.10
detectPretreatmentParameters()
now fully matches theQCidx
argument against the supplied class information when detecting the presence of QC samples.
metaboMisc 0.5.9
-
Corrected the exported file name for mode-less processed data for the
MetaboProfile
class. -
Fixed the character sanitation in
sanitiseTable()
. -
Fixed extraneous console messages in
detectMissInjections()
anddetectBatchDiff()
methods for theMetaboProfile
class. -
Enabled unit tests for methods for the
MetaboProfile
class. -
detectPretreatmentParameters()
now detects the presence of QC samples.
metaboMisc 0.5.8
sanitiseTable()
can now limit the numbers of characters in strings.
metaboMisc 0.5.7
-
Removed
aberHRML/metaboData
from the Remotes field in the DESCRIPTION to ensure that the CRAN version of metaboData is installed. -
Added
sanitiseTable()
that can be used to restrict the number of rows in a table and round numeric columns to a given number of significant figures.