Merge pull request #78 from jasenfinch/devel

v0.14.1
jasenfinch · Apr 23, 2021 · c2dac81 · c2dac81
2 parents 28515c1 + 4257526
commit c2dac81
Show file tree

Hide file tree

Showing 67 changed files with 123 additions and 112 deletions.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 Package: metabolyseR
 Title: Methods for Pre-Treatment, Data Mining and Correlation Analyses of Metabolomics Data
-Version: 0.14.0
+Version: 0.14.1
 Authors@R: person("Jasen", "Finch", email = "jsf9@aber.ac.uk", role = c("aut", "cre"))
 Description: A tool kit for pre-treatment, modelling, feature selection and correlation analyses of metabolomics data.
 URL:  https://jasenfinch.github.io/metabolyseR

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,7 @@
+# metabolyseR 0.14.1
+
+* Changed the `RSDthresh` argument default to 50% instead of 0.5% in `QCrsdFilter` generic.
+
 # metabolyseR 0.14.0
 
 * Added a `NEWS.md` file to track changes to the package.

diff --git a/R/QC.R b/R/QC.R
@@ -145,7 +145,7 @@ setGeneric("QCrsdFilter",
              d,
              cls = 'class',
              QCidx = 'QC', 
-             RSDthresh = 0.5) 
+             RSDthresh = 50) 
            {
              standardGeneric("QCrsdFilter")
            })

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/introduction.html b/docs/articles/introduction.html
diff --git a/docs/articles/modelling.html b/docs/articles/modelling.html
diff --git a/docs/articles/modelling_files/figure-html/outlier-detect-1.png b/docs/articles/modelling_files/figure-html/outlier-detect-1.png
diff --git a/docs/articles/modelling_files/figure-html/regression-mds-1.png b/docs/articles/modelling_files/figure-html/regression-mds-1.png
diff --git a/docs/articles/pre_treatment.html b/docs/articles/pre_treatment.html
diff --git a/docs/articles/pre_treatment_files/figure-html/impute_all_lda-1.png b/docs/articles/pre_treatment_files/figure-html/impute_all_lda-1.png
diff --git a/docs/articles/quick_start.html b/docs/articles/quick_start.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html