kraken2-build error

[dpak283]

Hi,

Referencing the issue below. I am unable to build the standard database due to connection issues. Tried modifying the rsync script as recommended but no luck. Also the ftp site for manual download seems to have moved. Can you please advise? Thanks a lot for your time.

Hi, I'm facing the same problem with kraken-build command. Do you have any idea when it will be fixed?
Thank you.

You can modify the rsync_from_ncbi.pl(miniconda3/envs/kraken2/libexec/rsync_from_ncbi.pl) file to solve this problem, add in the location of the picture.

if ( $full_path =~/^na/){
next
}

works perfectly!

Originally posted by @s4251484 in #114 (comment)

[yangkl0909]

Thanks.
Solved the same problem when pulling bacterial genome from Refseq.

rsync_from_ncbi.pl: unexpected FTP path (new server?) for na

[dpak283]

Hi, May i ask how?