Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

db_sort: unable to mmap database.jdb: Cannot allocate memory #147

Open
MZNOTE opened this issue Oct 1, 2020 · 0 comments
Open

db_sort: unable to mmap database.jdb: Cannot allocate memory #147

MZNOTE opened this issue Oct 1, 2020 · 0 comments

Comments

@MZNOTE
Copy link

MZNOTE commented Oct 1, 2020

(metawrap-env) [testP@ibs meta_db]$ kraken-build --jellyfish-hash-size 12800M -- work-on-disk --standard --threads 24 --db MY_KRAKEN_DATABASE
Found jellyfish v1.1.12
Skipping archaea, already completed library download
Skipping bacteria, already completed library download
Skipping viral, already completed library download
Kraken build set to minimize RAM usage.
Creating k-mer set (step 1 of 6)...
Found jellyfish v1.1.12
K-mer set created. [3h55m55.907s]
Skipping step 2, no database reduction requested.
Sorting k-mer set (step 3 of 6)...
db_sort: unable to mmap database.jdb: Cannot allocate memory
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@MZNOTE