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errors with build kraken database #161

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chaoyanggu opened this issue Feb 24, 2023 · 0 comments
Open

errors with build kraken database #161

chaoyanggu opened this issue Feb 24, 2023 · 0 comments

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@chaoyanggu
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when I build the database, I got the following errors:

--2023-02-24 09:17:27-- ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/accession2taxid/nucl_est.accession2taxid.gz
=> ‘nucl_est.accession2taxid.gz’
Resolving ftp.ncbi.nlm.nih.gov (ftp.ncbi.nlm.nih.gov)... 165.112.9.230, 130.14.250.10, 2607:f220:41f:250::229, ...
Connecting to ftp.ncbi.nlm.nih.gov (ftp.ncbi.nlm.nih.gov)|165.112.9.230|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done. ==> PWD ... done.
==> TYPE I ... done. ==> CWD (1) /pub/taxonomy/accession2taxid ... done.
==> SIZE nucl_est.accession2taxid.gz ... done.
==> PASV ... done. ==> RETR nucl_est.accession2taxid.gz ...
No such file ‘nucl_est.accession2taxid.gz’.

my codes were :/datapool/software/anaconda3/envs/kraken/bin/kraken-build --standard --threads 24 --db db

The address of the database is incomplete, please ask me where can I download the full data.

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