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Kraken2 error #163

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jsalas0798 opened this issue Apr 6, 2023 · 0 comments
Open

Kraken2 error #163

jsalas0798 opened this issue Apr 6, 2023 · 0 comments

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@jsalas0798
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Hi, i am using kraken from a supercomputer using linux. When i try to download de database i get this error
kraken2-build --standard --db kraken
Downloading nucleotide gb accession to taxon map...rsync: [Receiver] failed to c onnect to ftp.ncbi.nlm.nih.gov (130.14.250.13): Connection timed out (110)
rsync: [Receiver] failed to connect to ftp.ncbi.nlm.nih.gov (165.112.9.228): Con nection timed out (110)
rsync: [Receiver] failed to connect to ftp.ncbi.nlm.nih.gov (2607:f220:41e:250:: 10): Network is unreachable (101)
rsync: [Receiver] failed to connect to ftp.ncbi.nlm.nih.gov (2607:f220:41e:250:: 12): Network is unreachable (101)
rsync error: error in socket IO (code 10) at clientserver.c(139) [Receiver=3.2.7 ]

I also tried a variant that i saw that worked for other people:
kraken2-build --download-library bacteria --db bacteria_refseq --use-ftp

But i get this error
rsync_from_ncbi.pl: unexpected FTP path (new server?) for https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/128/725/GCF_900128725.1_BCifornacula_v1.0

I dont know hot to solve it. Please help me

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