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  1. connected-components-3d connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 423 47

  2. euclidean-distance-transform-3d euclidean-distance-transform-3d Public

    Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

    C++ 254 37

  3. kimimaro kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 160 28

  4. cloud-volume cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 156 53

  5. DracoPy DracoPy Public

    Python wrapper for Google's Draco mesh compression library.

    C++ 97 28

  6. znn-release znn-release Public archive

    Multi-core CPU implementation of deep learning for 2D and 3D sliding window convolutional networks (ConvNets).

    C++ 94 33

Repositories

Showing 10 of 185 repositories
  • cloud-files Public

    Threaded Python and CLI client library for AWS S3, Google Cloud Storage (GCS), in-memory, and the local filesystem.

    Python 43 BSD-3-Clause 8 15 1 Updated Jul 29, 2025
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    TypeScript 24 Apache-2.0 337 91 37 Updated Jul 28, 2025
  • cross-section Public

    Tools for computing properties of cross sections of 3D voxelized images.

    C++ 5 LGPL-3.0 2 2 3 Updated Jul 28, 2025
  • connected-components-3d Public

    Connected components on discrete and continuous multilabel 3D & 2D images. Handles 26, 18, and 6 connected variants; periodic boundaries (4, 8, & 6)

    C++ 423 LGPL-3.0 47 14 5 Updated Jul 26, 2025
  • kimimaro Public

    Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

    C++ 160 GPL-3.0 28 16 0 Updated Jul 26, 2025
  • cloud-volume Public

    Read and write Neuroglancer datasets programmatically.

    Python 156 BSD-3-Clause 53 83 5 Updated Jul 26, 2025
  • tile-transcoder Public

    Transfer and convert the file format of image tiles.

    Python 2 BSD-3-Clause 0 0 0 Updated Jul 25, 2025
  • seuron Public Forked from wongwill86/air-tasks

    SEUnglab neuRON pipeline

    Python 7 MIT 6 1 0 Updated Jul 25, 2025
  • igneous Public

    Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

    Python 49 GPL-3.0 23 26 5 Updated Jul 24, 2025
  • fastremap Public

    Remap, mask, renumber, unique, and in-place transposition of 3D labeled images. Point cloud too.

    C++ 60 LGPL-3.0 7 1 0 Updated Jul 23, 2025

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