This repository contains the R code and files underpinning: 'Protected areas support more species than unprotected areas in Great Britain, but lose them equally rapidly'. Rob Cooke, Francesca Mancini, Robin J. Boyd, Karl L. Evans, Anna Shaw, Thomas J. Webb, Nick J. B. Isaac. Biological Conservation (2023).
pa_occ.R contains the script to summarise the occupancy model outputs and produce the figures and appendices, including:
Species richness
Species trends
Temporal beta diversity
ROBITT assessment of data
launch_example.R contains an example script to create the objects and model specifications needed to run the occupancy models (i.e., occupancy model code) in a high-performance computing environment (e.g., https://jasmin.ac.uk/).