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Radio excess from ACG, MCG and PBH #297

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Radio excess from ACG, MCG and PBH #297

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Commits on Sep 25, 2022

  1. Added a new file

    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  2. Re-formatted SP.c

    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  3. Added SandBox

    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  4. Replaced SP.c

    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  5. Removed some test files

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    Junsong-Cang committed Sep 25, 2022
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  6. Testing

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    Junsong-Cang committed Sep 25, 2022
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  7. Added a camb style for 21cmFAST in SandBox, main.py is the main modul… 

    …e, Tools.py reads parameters from a ini file, *ini are inut files
    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  8. Added Radio_Excess parameters in AstroParams, Trad_box and SFRD_box a… 

    …dded to TsBox to store T_Radio and previous snapshots
    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  9. Added main modules for Radio Excess, main calculations are done in SP… 

    ….c, JSC.h are some modular funcitons
    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  10. Added Hawking Radiation module (Hawking_Radiation.h, see 2108.13256) … 

    …and some interpolation tables (Tables.h)
    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  11. Added Hawking Radiation module (Hawking_Radiation.h, see 2108.13256) … 

    …and some interpolation tables (Tables.h)
    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  12. Added caching interface for Trad_box

    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  13. Merge branch 'Radio_Excess' of https://github.com/JSC42/21cmFAST into… 

    … Radio_Excess
    @Junsong-Cang
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  14. Added parameters interface for radio excess and Hawking Radiation

    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  15. inputs.py seems to have been updated in current version of 21cmFAST, … 

    …reverting back to the original inputs.py
    @Junsong-Cang
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  16. Merge branch 'Radio_Excess' of https://github.com/JSC42/21cmFAST into… 

    … Radio_Excess
    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  17. Updating inputs.py again, this version of inputs.py is identical to t… 

    …he original one (except for one test MSG)
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  18. Added new parameter interface, sorry about the confusion but please i… 

    …gnore all previous commits fot inputs.py (and possibly outputs.py)
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  19. Please ignore all previous commits associated with outputs.py, the la… 

    …test version of output.py seems to be very different from the version I used, so I added caching tools for Radio Temp box and SFRD_box here manually
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  20. Added T_Radio to T21 calculation

    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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  21. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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  22. removed SandBox interface

    @Junsong-Cang
    Junsong-Cang committed Sep 25, 2022
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Commits on Sep 30, 2022

  1. Removed signatures

    @Junsong-Cang
    Junsong-Cang committed Sep 30, 2022
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Commits on Oct 17, 2022

  1. Added the USE_Radio_ACG FlagOption to c

    @Junsong-Cang
    Junsong-Cang committed Oct 17, 2022
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  2. Added flag_options handlings for all the new features

    @Junsong-Cang
    Junsong-Cang committed Oct 17, 2022
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  3. Added FlagOptions for all the new features, sending to SNS server fro… 

    … tests
    @Junsong-Cang
    Junsong-Cang committed Oct 17, 2022
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Commits on Oct 25, 2022

  1. Added a test string

    Junsong Cang committed Oct 25, 2022
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  2. Removed debug strings, moving all tests to Trantor now

    Junsong Cang committed Oct 25, 2022
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  3. Added test string

    Junsong Cang committed Oct 25, 2022
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  4. [pre-commit.ci] auto fixes from pre-commit.com hooks 

    for more information, see https://pre-commit.ci
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  5. Added sth

    Junsong Cang committed Oct 25, 2022
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  6. Merge branch 'Radio_Excess' of https://github.com/JSC42/21cmFAST into… 

    … Radio_Excess

Conflicts:
	src/py21cmfast/src/21cmFAST.h
    Junsong Cang committed Oct 25, 2022
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  7. Removed test string, sending to SNS Trantor

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    Junsong-Cang committed Oct 25, 2022
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  8. Merge branch 'Radio_Excess' of https://github.com/JSC42/21cmFAST into… 

    … Radio_Excess

Conflicts:
	src/py21cmfast/src/21cmFAST.h
    Junsong Cang committed Oct 25, 2022
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Commits on Oct 26, 2022

  1. Fixed pre-commit error

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    Junsong-Cang committed Oct 26, 2022
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  2. Merge branch '21cmfast:master' into Radio_Excess

    @Junsong-Cang
    Junsong-Cang committed Oct 26, 2022
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Commits on Oct 27, 2022

  1. Changed Use_Radio_ACG to Use_RADIO_ACG, other FlagOptions will be in … 

    …caps after the test
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  2. Merge branch 'master' into Radio_Excess

    @Junsong-Cang
    Junsong-Cang committed Oct 27, 2022
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  3. All went well with initial test, moving on to the other FlagOptions

    @Junsong-Cang
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  4. Changed USE_Radio_PBH to USE_RADIO_PBH, preparing for remake tests

    @Junsong-Cang
    Junsong-Cang committed Oct 27, 2022
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  5. All new FlagOptions set to cap, preparing for tests

    @Junsong-Cang
    Junsong-Cang committed Oct 27, 2022
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Commits on Oct 28, 2022

  1. Revereted BrightnessTemperatureBox.c to the original indentation style

    @Junsong-Cang
    Junsong-Cang committed Oct 28, 2022
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Commits on Nov 8, 2022

  1. Merge branch '21cmfast:master' into Radio_Excess

    @Junsong-Cang
    Junsong-Cang committed Nov 8, 2022
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  2. Added excess radio background for SUBCELL_RSD

    @Junsong-Cang
    Junsong-Cang committed Nov 8, 2022
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  3. Added comments for new params

    @Junsong-Cang
    Junsong-Cang committed Nov 8, 2022
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  4. Removed Use_Radio_ACG switch in SP.c, ACG radio bkg switches are now … 

    …controled by FlagOptions. Moving on to other features
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  5. Fixed a bug

    @Junsong-Cang
    Junsong-Cang committed Nov 8, 2022
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  6. Changed some doc strings

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    Junsong-Cang committed Nov 8, 2022
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Commits on Nov 9, 2022

  1. Removed Use_Radio_MCG Bool in SP.c

    @Junsong-Cang
    Junsong-Cang committed Nov 9, 2022
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  2. Removed fbh>1 checks, I will leave it to the user to make sure this d… 

    …oes not happen
    @Junsong-Cang
    Junsong-Cang committed Nov 9, 2022
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  3. Removed Use_Radio_PBH switch in PS.c

    @Junsong-Cang
    Junsong-Cang committed Nov 9, 2022
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  4. Previous commit might have failed, USE_HAWKING_RADIATION bool removed… 

    … from SP.c
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  5. Removed subcel_RSD warning in SP.c

    @Junsong-Cang
    Junsong-Cang committed Nov 9, 2022
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  6. Fixed a small bug in Get_Radio_Temp_HMG_Astro

    @Junsong-Cang
    Junsong-Cang committed Nov 9, 2022
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  7. Moved all Radio_Temp_HMG calculations to RadioExcess.h

    @Junsong-Cang
    Junsong-Cang committed Nov 9, 2022
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  8. Added doc

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    Junsong-Cang committed Nov 9, 2022
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Commits on Nov 10, 2022

  1. Fotgot what I changed

    @Junsong-Cang
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  2. Moved overdensity boundary calculation outside of the parallel loop, … 

    …can give wrong results if using multiple threads
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  3. Testing error module ( not sure why previous push didn't work)

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  4. More tests in error modul

    @Junsong-Cang
    Junsong-Cang committed Nov 10, 2022
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  5. more tests

    @Junsong-Cang
    Junsong-Cang committed Nov 10, 2022
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  6. Sending to Trantor server for more tests

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  7. Removed test

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    Junsong-Cang committed Nov 10, 2022
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Commits on Nov 11, 2022

  1. Moved Radio_MCG param check to python

    @Junsong-Cang
    Junsong-Cang committed Nov 11, 2022
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  2. Reformatted inputs.py

    @Junsong-Cang
    Junsong-Cang committed Nov 11, 2022
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  3. Moved Radio_PBH and Hawking radiation param checks to inputs.py

    @Junsong-Cang
    Junsong-Cang committed Nov 11, 2022
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  4. Updating doc

    @Junsong-Cang
    Junsong-Cang committed Nov 11, 2022
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  5. Updating docs v2

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    Junsong-Cang committed Nov 11, 2022
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  6. Fixed a bug, USE_INTERPOLATION_TABLES is in user_params, not flag_opt… 

    …ions
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  7. Moved parameter check features in SP.c to inputs.py, allowed basicall… 

    …y arbitary (< 10000 ) NUM_FILTER_STEPS_FOR_Ts values by extending the size of Rct_Tk_Table
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    Junsong-Cang committed Nov 11, 2022
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Commits on Dec 18, 2022

  1. Changed fR to be entered in log

    @Junsong-Cang
    Junsong-Cang committed Dec 18, 2022
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  2. fR_mini now entered in log10

    @Junsong-Cang
    Junsong-Cang committed Dec 18, 2022
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  3. fbh now entered in log10

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    Junsong-Cang committed Dec 18, 2022
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  4. mbh now entered in log10

    @Junsong-Cang
    Junsong-Cang committed Dec 18, 2022
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  5. Print mbh in input.py

    @Junsong-Cang
    Junsong-Cang committed Dec 18, 2022
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  6. Changed debugging

    @Junsong-Cang
    Junsong-Cang committed Dec 18, 2022
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  7. Removed debug feature in SP.c

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    Junsong-Cang committed Dec 18, 2022
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Commits on Feb 13, 2023

  1. Fixed the Radio_Zmin factor in Get_Radio_Temp_HMG_Astro

    @Junsong-Cang
    Junsong-Cang committed Feb 13, 2023
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  2. Added the Radio_Zmax factor in Get_Radio_Temp_HMG_PBH

    @Junsong-Cang
    Junsong-Cang committed Feb 13, 2023
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Commits on Feb 15, 2023

  1. Set Debug_Printer in RadioExcess.h to false

    @Junsong-Cang
    Junsong-Cang committed Feb 15, 2023
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Commits on Mar 27, 2023

  1. removed a backup file (bak.c) and unused OutputFile from Get_Radio_Te… 

    …mp_HMG_Astro
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Commits on Apr 18, 2023

  1. Fixed Phi_ave and Phi_ave_mini issues

    @Junsong-Cang
    Junsong-Cang committed Apr 18, 2023
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  2. removed bak.c

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    Junsong-Cang committed Apr 18, 2023
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Commits on Oct 23, 2023

  1. added a doc

    @Junsong-Cang
    Junsong-Cang committed Oct 23, 2023
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  2. added compilation flag for macos

    @Junsong-Cang
    Junsong-Cang committed Oct 23, 2023
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  3. moved pbh features to the DarkSide branch, added SFRD_box and SFRD_MI… 

    …NI_box objects in TsBox
    @Junsong-Cang
    Junsong-Cang committed Oct 23, 2023
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  4. added debugging features for printing HMF and mturn, mc

    @Junsong-Cang
    Junsong-Cang committed Oct 23, 2023
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  5. commented for test

    @Junsong-Cang
    Junsong-Cang committed Oct 23, 2023
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  6. test

    @Junsong-Cang
    Junsong-Cang committed Oct 23, 2023
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Commits on Oct 24, 2023

  1. using debug for io.c

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    Junsong-Cang committed Oct 24, 2023
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Commits on Oct 28, 2023

  1. moved debug features to the back

    @Junsong-Cang
    Junsong-Cang committed Oct 28, 2023
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  2. added some doc for History_box, considering replacing SFRD_box and SF… 

    …RD_MINI_box with average object or maybe they can somehow be accesses from Fcoll or Fcoll_MINI boxes?
    @Junsong-Cang
    Junsong-Cang committed Oct 28, 2023
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  3. preparing to expand History_box to store m_turn_II and m_turn_III

    @Junsong-Cang
    Junsong-Cang committed Oct 28, 2023
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  4. changed history_box length and passed mturns from io.c to sp.c, next:… 

    … accurate and smarter interpolation + feed io mturn to sp.c
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Commits on Oct 29, 2023

  1. upgraded and tested Find_Index and Interp_1D, works well

    @Junsong-Cang
    Junsong-Cang committed Oct 29, 2023
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  2. removed redudent features, upgraded interpolation

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    Junsong-Cang committed Oct 29, 2023
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  3. compilation works ok

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    Junsong-Cang committed Oct 29, 2023
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  4. added debug format

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    Junsong-Cang committed Oct 29, 2023
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  5. Test 1: Test_History_box_Interp shows identical agreement with Histor… 

    …y_box_Interp
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    Junsong-Cang committed Oct 29, 2023
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  6. Test 2: mturns successfully passed from io.c to History_Box

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    Junsong-Cang committed Oct 29, 2023
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  7. tests show that mturns has been passed from io.c to history_box, so n… 

    …o need to keep txt print feature in io.c
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    Junsong-Cang committed Oct 29, 2023
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  8. fixed a minor bug detected in new Get_Radio_Temp_HMG function

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    Junsong-Cang committed Oct 29, 2023
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  9. added a flag Calibrate_EoR_feedback to determine whether to use EoR f… 

    …eedback for radio excess, default false
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    Junsong-Cang committed Oct 29, 2023
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  10. moved some variables to head

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    Junsong-Cang committed Oct 29, 2023
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  11. added empty function for calibrating Phi_mini, maybe also need to do … 

    …one for PopII
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    Junsong-Cang committed Oct 29, 2023
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Commits on Oct 30, 2023

  1. dded module for EoR-calibrated Phi_ave_mini

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    Junsong-Cang committed Oct 30, 2023
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  2. oops, missed a factor in Calibrate_Phi_mini

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    Junsong-Cang committed Oct 30, 2023
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  3. allow for multiple radio sources, still have to have same spectra ind… 

    …ex though
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    Junsong-Cang committed Oct 30, 2023
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Commits on Oct 31, 2023

  1. nothing new, just testing github speed-up tool

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    Junsong-Cang committed Oct 31, 2023
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  2. changed something

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    Junsong-Cang committed Oct 31, 2023
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  3. changed things

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    Junsong-Cang committed Oct 31, 2023
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  4. kjkhug

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    Junsong-Cang committed Oct 31, 2023
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  5. found the NaN thing

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    Junsong-Cang committed Oct 31, 2023
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Commits on Nov 1, 2023

  1. all done, starting tests

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    Junsong-Cang committed Nov 1, 2023
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  2. add tests complete, ready for new run

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    Junsong-Cang committed Nov 1, 2023
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Commits on Nov 4, 2023

  1. silenced some warnings, debug feature

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    Junsong-Cang committed Nov 4, 2023
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  2. Tests complete, transfered all debug features to Radio_debug branch

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    Junsong-Cang committed Nov 4, 2023
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Commits on Nov 5, 2023

  1. addec back SFRD_box, malloc error on cluster is caused by accessing u… 

    …ninitialised memory so an additional line is added to Ion.c
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    Junsong-Cang committed Nov 5, 2023
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  2. moved Calibrate_Phi_mini back to the old place

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    Junsong-Cang committed Nov 5, 2023
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  3. actually let's keep the debug features for now

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    Junsong-Cang committed Nov 5, 2023
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Commits on Nov 6, 2023

  1. gfht

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    Junsong-Cang committed Nov 6, 2023
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Commits on Nov 8, 2023

  1. removed SFRD boxes to save memory, turned off debug features

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    Junsong-Cang committed Nov 8, 2023
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Commits on Nov 11, 2023

  1. sdfvfb

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    Junsong-Cang committed Nov 11, 2023
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Commits on Nov 14, 2023

  1. pass mturn info from IO.c to SP.c using mturns_EoR array in TsBox, po… 

    …inter can have mem issue that I cannot solve
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    Junsong-Cang committed Nov 14, 2023
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  2. moved Radio_Temp_ave outside mpi loop, relavent only for EoR calibration

    @Junsong-Cang
    Junsong-Cang committed Nov 14, 2023
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Commits on Nov 15, 2023

  1. removed initialisation for Trad_box and History_box, did this later

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    Junsong-Cang committed Nov 15, 2023
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Commits on Nov 16, 2023

  1. added mpi clauses for radio module

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    Junsong-Cang committed Nov 16, 2023
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