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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,190 @@ | ||
| library(reticulate) | ||
| library(R6) | ||
| library(purrr) | ||
| listDepth <- plotrix::listDepth | ||
| check.numeric <- varhandle::check.numeric | ||
| Pymod <- reticulate::import("pyopenms") | ||
| reticulate::py_run_string("import gc") | ||
| copy <- reticulate::import("copy") | ||
| py_builtin <- reticulate::import_builtins(convert = F) | ||
|
|
||
| # R6 class object conversion to python class object. | ||
| `r_to_py.R6` <- function(i,...){ | ||
| tryCatch({ | ||
| i$.__enclos_env__$private$py_obj | ||
| }, error = function(e) { "conversion not supported for this class"} | ||
| ) | ||
| } | ||
|
|
||
| # python function to convert a python dict having byte type key to R named list with names as string. | ||
| py_run_string(paste("def transform_dict(d):"," return dict(zip([k.decode('utf-8') for k in d.keys()], d.values()))",sep = "\n")) | ||
|
|
||
| # Returns the name of wrapper R6 class | ||
| class_to_wrap <- function(py_ob){ | ||
| strsplit(class(py_ob)[1],"\\.")[[1]][2] | ||
| } | ||
|
|
||
| # R implementation of _AAIndex | ||
| AAIndex <- R6Class(classname = "AAIndex",cloneable = FALSE, | ||
|
|
||
| private = list(py_obj = NA), | ||
|
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|
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| public = list( | ||
|
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||
| # C++ signature: double aliphatic(char aa) | ||
| aliphatic = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$aliphatic(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double acidic(char aa) | ||
| acidic = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$acidic(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double basic(char aa) | ||
| basic = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$basic(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double polar(char aa) | ||
| polar = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$polar(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double getKHAG800101(char aa) | ||
| getKHAG800101 = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$getKHAG800101(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double getVASM830103(char aa) | ||
| getVASM830103 = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$getVASM830103(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double getNADH010106(char aa) | ||
| getNADH010106 = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$getNADH010106(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double getNADH010107(char aa) | ||
| getNADH010107 = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$getNADH010107(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double getWILM950102(char aa) | ||
| getWILM950102 = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$getWILM950102(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double getROBB760107(char aa) | ||
| getROBB760107 = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$getROBB760107(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double getOOBM850104(char aa) | ||
| getOOBM850104 = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$getOOBM850104(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double getFAUJ880111(char aa) | ||
| getFAUJ880111 = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$getFAUJ880111(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double getFINA770101(char aa) | ||
| getFINA770101 = function(aa){ | ||
|
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||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$getFINA770101(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| }, | ||
|
|
||
| # C++ signature: double getARGP820102(char aa) | ||
| getARGP820102 = function(aa){ | ||
|
|
||
| if(!(is_scalar_character(aa))){ stop("arg aa wrong type") } | ||
| py_run_string("aa = bytes(aa)") | ||
| py_ans = private$py_obj$getARGP820102(py$aa) | ||
| py_run_string("del aa") | ||
| r_ans = py_ans | ||
| return(r_ans) | ||
| } | ||
|
|
||
| ) | ||
| ) |
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