Added coverage + Codacy badges

Used jacoco maven agent and jacoco ant reporter.
3D-e-Chem · Dec 13, 2016 · 234aa85 · 234aa85
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commit 234aa85
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diff --git a/.travis.yml b/.travis.yml
@@ -4,5 +4,10 @@ jdk: oraclejdk8
 cache:
   directories:
    - $HOME/.m2
+   - $HOME/jpm
 install: mvn package -B
 script: xvfb-run mvn verify -B
+after_success:
+  - curl -sL https://github.com/jpm4j/jpm4j.installers/raw/master/dist/biz.aQute.jpm.run.jar > ~/.m2/jpm4j.jar
+  - java -jar $HOME/.m2/jpm4j.jar -u install com.codacy:codacy-coverage-reporter:assembly
+  - $HOME/jpm/bin/codacy-coverage-reporter -l Java -r tests/target/jacoco/report/jacoco.xml
diff --git a/README.md b/README.md
@@ -4,9 +4,9 @@ KNIME nodes to configure, run and analyze PLANTS protein-ligand docking
 
 PLANTS homepage at http://www.mnf.uni-tuebingen.de/fachbereiche/pharmazie-und-biochemie/pharmazie/pharmazeutische-chemie/pd-dr-t-exner/research/plants.html
 
-Knime node skeleton with sample code as described [here](https://tech.knime.org/developer-guide).
-
 [![Build Status](https://travis-ci.org/3D-e-Chem/knime-plants.svg?branch=master)](https://travis-ci.org/3D-e-Chem/knime-plants)
+[![Codacy Badge](https://api.codacy.com/project/badge/Grade/74d1f7600e4c43cbab963d7f30963cee)](https://www.codacy.com/app/3D-e-Chem/knime-plants?utm_source=github.com&amp;utm_medium=referral&amp;utm_content=3D-e-Chem/knime-plants&amp;utm_campaign=Badge_Grade)
+[![Codacy Badge](https://api.codacy.com/project/badge/Coverage/74d1f7600e4c43cbab963d7f30963cee)](https://www.codacy.com/app/3D-e-Chem/knime-plants?utm_source=github.com&utm_medium=referral&utm_content=3D-e-Chem/knime-plants&utm_campaign=Badge_Coverage)
 
 This project uses [Eclipse Tycho](https://www.eclipse.org/tycho/) to perform build steps.
 

diff --git a/tests/pom.xml b/tests/pom.xml
@@ -1,5 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
 
 	<parent>
@@ -13,14 +14,103 @@
 
 	<build>
 		<plugins>
+			<plugin>
+				<groupId>org.jacoco</groupId>
+				<artifactId>jacoco-maven-plugin</artifactId>
+				<version>0.7.8</version>
+				<executions>
+					<execution>
+						<goals>
+							<goal>prepare-agent</goal>
+						</goals>
+						<configuration>
+							<include>nl.esciencecenter.e3dchem.knime.plants.*</include>
+						</configuration>
+					</execution>
+				</executions>
+			</plugin>
+			<!-- the report goal of jacoco-maven-plugin plugin shows coverage of tests. 
+			  To get coverage of ../plugin/src/ use the jacoco ant reporter.
+			  See https://intellectualcramps.wordpress.com/2012/03/22/jacoco-tycho-and-coverage-reports/
+			-->
+			<plugin>
+				<groupId>org.apache.maven.plugins</groupId>
+				<artifactId>maven-antrun-plugin</artifactId>
+				<version>1.8</version>
+				<dependencies>
+					<dependency>
+						<groupId>org.jacoco</groupId>
+						<artifactId>org.jacoco.ant</artifactId>
+						<version>0.7.8</version>
+					</dependency>
+					<dependency>
+						<groupId>ant-contrib</groupId>
+						<artifactId>ant-contrib</artifactId>
+						<version>20020829</version>
+					</dependency>
+				</dependencies>
+				<executions>
+					<execution>
+						<id>jacoco-report</id>
+						<phase>verify</phase>
+						<goals>
+							<goal>run</goal>
+						</goals>
+						<configuration>
+							<target>
+								<property name="source-location" location="../" />
+								<taskdef name="jacoco-report" classname="org.jacoco.ant.ReportTask"
+									classpathref="maven.plugin.classpath" />
+								<taskdef classpathref="maven.runtime.classpath"
+									resource="net/sf/antcontrib/antcontrib.properties" />
+								<available file="${project.basedir}/target/jacoco.exec"
+									property="jacoco.exec.file.exists" />
+								<echo message="${project.basedir}/target/jacoco.exec" />
+								<if>
+									<equals arg1="${jacoco.exec.file.exists}" arg2="true" />
+									<then>
+										<echo message="Executing jacoco report" />
+										<echo message="${source-location}" />
+										<trycatch>
+											<try>
+												<jacoco-report>
+													<executiondata>
+														<file file="${project.basedir}/target/jacoco.exec" />
+													</executiondata>
+
+													<structure name="knime-plants/plugin">
+														<classfiles>
+															<fileset dir="${source-location}/plugin/target/classes" />
+														</classfiles>
+														<sourcefiles encoding="UTF-8">
+															<fileset dir="${source-location}/plugin/src/java" />
+														</sourcefiles>
+													</structure>
+													<html destdir="${project.basedir}/target/jacoco/report" />
+													<xml destfile="${project.basedir}/target/jacoco/report/jacoco.xml" />
+												</jacoco-report>
+											</try>
+											<catch>
+												<echo>skipping</echo>
+											</catch>
+										</trycatch>
+									</then>
+									<else>
+										<echo message="No jacoco.exec file found." />
+									</else>
+								</if>
+							</target>
+						</configuration>
+					</execution>
+				</executions>
+			</plugin>
 			<plugin>
 				<groupId>org.eclipse.tycho</groupId>
 				<artifactId>tycho-surefire-plugin</artifactId>
 				<version>${tycho.version}</version>
 				<configuration>
-					<argLine>${tycho.test.jvmArgs}</argLine>
+					<argLine>${tycho.testArgLine} ${tycho.test.jvmArgs}</argLine>
 				</configuration>
-
 			</plugin>
 		</plugins>
 	</build>