Merge branch 'develop' into docs/plugin_create

.github/workflows/tests.yml

@@ -123,7 +123,7 @@ jobs:
     steps:
       - uses: actions/checkout@v4
       - name: Setup Miniconda
-        uses: conda-incubator/setup-miniconda@v2
+        uses: conda-incubator/setup-miniconda@v3
         with:
           miniforge-version: latest
           miniforge-variant: mambaforge

package/PartSeg/common_gui/channel_control.py

@@ -677,7 +677,7 @@ def paintEvent(self, a0: QPaintEvent) -> None:
         painter.setPen(QColor("white"))
         painter.setBrush(QColor("white"))
         painter.drawRect(self.rect() - self.margin)
-        icon: QIcon = qta.icon("fa5s.lock")
+        icon: QIcon = qta.icon("fa5s.lock", color="black")
         icon.paint(painter, self.rect() - self.margin * 2)
         painter.restore()
 
@@ -701,7 +701,7 @@ def paintEvent(self, a0: QPaintEvent) -> None:
         painter.setPen(QColor("white"))
         painter.setBrush(QColor("white"))
         painter.drawRect(self.rect() - self.margin)
-        icon: QIcon = qta.icon("mdi.blur")
+        icon: QIcon = qta.icon("mdi.blur", color="black")
         icon.paint(painter, self.rect())
         painter.restore()
 
@@ -721,6 +721,6 @@ def paintEvent(self, a0: QPaintEvent) -> None:
         painter.setPen(QColor("white"))
         painter.setBrush(QColor("white"))
         painter.drawRect(self.rect() - self.margin)
-        icon: QIcon = qta.icon("mdi.chart-bell-curve-cumulative")
+        icon: QIcon = qta.icon("mdi.chart-bell-curve-cumulative", color="black")
         icon.paint(painter, self.rect())
         painter.restore()

requirements/constraints_py3.10.txt

@@ -23,34 +23,32 @@ attrs==23.1.0
     #   referencing
 babel==2.13.1
     # via sphinx
-backcall==0.2.0
-    # via ipython
 build==1.0.3
     # via npe2
 cachey==0.2.1
     # via napari
-certifi==2023.7.22
+certifi==2023.11.17
     # via
     #   napari
     #   requests
     #   sentry-sdk
-charset-normalizer==3.3.1
+charset-normalizer==3.3.2
     # via requests
 click==8.1.7
     # via
     #   dask
     #   typer
 cloudpickle==3.0.0
     # via dask
-comm==0.1.4
+comm==0.2.0
     # via ipykernel
 coverage==7.3.2
     # via
     #   coverage
     #   pytest-cov
 czifile==2019.7.2
     # via PartSeg (setup.cfg)
-dask==2023.10.1
+dask==2023.12.0
     # via
     #   dask
     #   napari
@@ -66,7 +64,7 @@ docutils==0.17.1
     # via sphinx
 et-xmlfile==1.1.0
     # via openpyxl
-exceptiongroup==1.1.3
+exceptiongroup==1.2.0
     # via
     #   ipython
     #   pytest
@@ -76,19 +74,19 @@ fonticon-fontawesome6==6.4.0
     # via PartSeg (setup.cfg)
 freetype-py==2.4.0
     # via vispy
-fsspec==2023.10.0
+fsspec==2023.12.0
     # via dask
 h5py==3.10.0
     # via PartSeg (setup.cfg)
 heapdict==1.0.1
     # via cachey
 hsluv==5.0.4
     # via vispy
-idna==3.4
+idna==3.6
     # via requests
 imagecodecs==2023.9.18
     # via PartSeg (setup.cfg)
-imageio==2.31.6
+imageio==2.33.0
     # via
     #   -r requirements/version_denylist.txt
     #   PartSeg (setup.cfg)
@@ -97,39 +95,37 @@ imageio==2.31.6
     #   scikit-image
 imagesize==1.4.1
     # via sphinx
-importlib-metadata==6.8.0
+importlib-metadata==7.0.0
     # via dask
 in-n-out==0.1.9
     # via app-model
 iniconfig==2.0.0
     # via pytest
-ipykernel==6.26.0
+ipykernel==6.27.1
     # via
     #   PartSeg (setup.cfg)
     #   napari-console
     #   qtconsole
-ipython==8.16.1
+ipython==8.18.1
     # via
     #   PartSeg (setup.cfg)
     #   ipykernel
     #   napari-console
-ipython-genutils==0.2.0
-    # via qtconsole
 jedi==0.19.1
     # via ipython
 jinja2==3.1.2
     # via
     #   numpydoc
     #   sphinx
-jsonschema==4.19.1
+jsonschema==4.20.0
     # via napari
-jsonschema-specifications==2023.7.1
+jsonschema-specifications==2023.11.2
     # via jsonschema
-jupyter-client==8.5.0
+jupyter-client==8.6.0
     # via
     #   ipykernel
     #   qtconsole
-jupyter-core==5.4.0
+jupyter-core==5.5.0
     # via
     #   ipykernel
     #   jupyter-client
@@ -188,7 +184,7 @@ npe2==0.7.3
     # via
     #   -r requirements/version_denylist.txt
     #   napari
-numpy==1.26.1
+numpy==1.26.2
     # via
     #   PartSeg (setup.cfg)
     #   czifile
@@ -228,7 +224,7 @@ packaging==23.2
     #   sphinx
     #   superqt
     #   vispy
-pandas==2.1.2
+pandas==2.1.3
     # via
     #   PartSeg (setup.cfg)
     #   napari
@@ -240,32 +236,30 @@ partsegcore-compiled-backend==0.15.1
     # via PartSeg (setup.cfg)
 partsegdata==0.10.0
     # via PartSeg (setup.cfg)
-pexpect==4.8.0
-    # via ipython
-pickleshare==0.7.5
+pexpect==4.9.0
     # via ipython
-pillow==10.0.1
+pillow==10.1.0
     # via
     #   imageio
     #   napari
     #   scikit-image
 pint==0.22
     # via napari
-platformdirs==3.11.0
+platformdirs==4.0.0
     # via
     #   jupyter-core
     #   pooch
 pluggy==1.3.0
     # via pytest
 pooch==1.8.0
     # via scikit-image
-prompt-toolkit==3.0.39
+prompt-toolkit==3.0.41
     # via ipython
 psutil==5.9.6
     # via
     #   ipykernel
     #   napari
-psygnal==0.9.4
+psygnal==0.9.5
     # via
     #   PartSeg (setup.cfg)
     #   app-model
@@ -285,7 +279,7 @@ pydantic==1.10.13
     #   app-model
     #   napari
     #   npe2
-pygments==2.16.1
+pygments==2.17.2
     # via
     #   PartSeg (setup.cfg)
     #   ipython
@@ -294,7 +288,7 @@ pygments==2.16.1
     #   rich
     #   sphinx
     #   superqt
-pyinstaller==6.1.0
+pyinstaller==6.2.0
     # via PartSeg (setup.cfg)
 pyinstaller-hooks-contrib==2023.10
     # via pyinstaller
@@ -314,9 +308,9 @@ pyqt5-sip==12.13.0
     # via
     #   -r requirements/version_denylist.txt
     #   pyqt5
-pyqt6==6.5.3
+pyqt6==6.6.1
     # via PartSeg (setup.cfg)
-pyqt6-qt6==6.5.3
+pyqt6-qt6==6.6.1
     # via pyqt6
 pyqt6-sip==13.6.0
     # via pyqt6
@@ -364,7 +358,7 @@ pyzmq==25.1.1
     #   qtconsole
 qtawesome==1.2.3
     # via PartSeg (setup.cfg)
-qtconsole==5.4.4
+qtconsole==5.5.1
     # via
     #   PartSeg (setup.cfg)
     #   napari-console
@@ -377,7 +371,7 @@ qtpy==2.4.1
     #   qtawesome
     #   qtconsole
     #   superqt
-referencing==0.30.2
+referencing==0.31.1
     # via
     #   jsonschema
     #   jsonschema-specifications
@@ -387,22 +381,22 @@ requests==2.31.0
     #   pooch
     #   pyconify
     #   sphinx
-rich==13.6.0
+rich==13.7.0
     # via npe2
-rpds-py==0.10.6
+rpds-py==0.13.2
     # via
     #   jsonschema
     #   referencing
 scikit-image==0.22.0
     # via
     #   PartSeg (setup.cfg)
     #   napari
-scipy==1.11.3
+scipy==1.11.4
     # via
     #   PartSeg (setup.cfg)
     #   napari
     #   scikit-image
-sentry-sdk==1.32.0
+sentry-sdk==1.38.0
     # via
     #   -r requirements/version_denylist.txt
     #   PartSeg (setup.cfg)
@@ -413,7 +407,7 @@ shiboken6==6.6.0
     #   pyside6
     #   pyside6-addons
     #   pyside6-essentials
-simpleitk==2.3.0
+simpleitk==2.3.1
     # via PartSeg (setup.cfg)
 six==1.16.0
     # via
@@ -468,15 +462,15 @@ toolz==0.12.0
     #   dask
     #   napari
     #   partd
-tornado==6.3.3
+tornado==6.4
     # via
     #   ipykernel
     #   jupyter-client
 tqdm==4.66.1
     # via napari
 traceback-with-variables==2.0.4
     # via PartSeg (setup.cfg)
-traitlets==5.12.0
+traitlets==5.14.0
     # via
     #   comm
     #   ipykernel
@@ -499,7 +493,7 @@ typing-extensions==4.8.0
     #   typer
 tzdata==2023.3
     # via pandas
-urllib3==2.0.7
+urllib3==2.1.0
     # via
     #   requests
     #   sentry-sdk
@@ -508,9 +502,9 @@ vispy==0.12.2
     #   PartSeg (setup.cfg)
     #   napari
     #   napari-svg
-wcwidth==0.2.8
+wcwidth==0.2.12
     # via prompt-toolkit
-wrapt==1.15.0
+wrapt==1.16.0
     # via napari
 xlrd==2.0.1
     # via PartSeg (setup.cfg)
@@ -520,5 +514,5 @@ zipp==3.17.0
     # via importlib-metadata
 
 # The following packages are considered to be unsafe in a requirements file:
-setuptools==68.2.2
+setuptools==69.0.2
     # via pyinstaller