Add python 3.12 testing

4DNucleome · Mar 5, 2024 · dddce12 · dddce12
1 parent c873239
commit dddce12
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Showing 14 changed files with 919 additions and 45 deletions.
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
@@ -39,7 +39,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python_version: ["3.8", "3.9", "3.10", "3.11"]
+        python_version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
         os: ["ubuntu-20.04"]
         qt_backend: ["PyQt5"]
         tox_args: [ "" ]
@@ -78,7 +78,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python_version: ["3.8", "3.9", "3.10"]
+        python_version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
         os: ["ubuntu-20.04", "macos-11", "windows-2019"]
         qt_backend: ["PySide2", "PyQt5"]
         include:

diff --git a/.github/workflows/upgrade-dependencies.yml b/.github/workflows/upgrade-dependencies.yml
@@ -35,7 +35,7 @@ jobs:
           pip install -U uv
           flags=(--extra pyqt5 --extra pyqt6 --extra pyside2 --extra pyside6 --extra test --extra pyinstaller)
 
-          for pyv in 3.8 3.9 3.10 3.11; do
+          for pyv in 3.8 3.9 3.10 3.11 3.12; do
             uv pip compile --python-version ${pyv} --upgrade --output-file requirements/constraints_py${pyv}.txt pyproject.toml requirements/version_denylist.txt "${flags[@]}"
             uv pip compile --python-version ${pyv} --upgrade --output-file requirements/constraints_py${pyv}_pydantic_1.txt pyproject.toml requirements/version_denylist.txt "${flags[@]}" --constraint requirements/pydantic_1.txt
           done

diff --git a/pyproject.toml b/pyproject.toml
@@ -23,6 +23,7 @@ classifiers = [
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
+    "Programming Language :: Python :: 3.12",
     "Programming Language :: Python :: Implementation :: CPython",
     "Topic :: Scientific/Engineering :: Bio-Informatics",
     "Topic :: Scientific/Engineering :: Image Processing",

diff --git a/requirements/constraints_py3.10.txt b/requirements/constraints_py3.10.txt
@@ -20,7 +20,7 @@ attrs==23.2.0
     #   referencing
 babel==2.14.0
     # via sphinx
-build==1.0.3
+build==1.1.1
     # via npe2
 cachey==0.2.1
     # via napari
@@ -81,7 +81,9 @@ imageio==2.34.0
 imagesize==1.4.1
     # via sphinx
 importlib-metadata==7.0.1
-    # via dask
+    # via
+    #   build
+    #   dask
 in-n-out==0.1.9
     # via app-model
 iniconfig==2.0.0
@@ -90,7 +92,7 @@ ipykernel==6.29.3
     # via
     #   napari-console
     #   qtconsole
-ipython==8.22.1
+ipython==8.22.2
     # via
     #   ipykernel
     #   napari-console
@@ -124,7 +126,7 @@ local-migrator==0.1.10
 locket==1.0.0
     # via partd
 lxml==5.1.0
-magicgui==0.8.1
+magicgui==0.8.2
     # via napari
 mahotas==1.4.13
 markdown-it-py==3.0.0
@@ -258,7 +260,7 @@ pygments==2.17.2
     #   sphinx
     #   superqt
 pyinstaller==6.4.0
-pyinstaller-hooks-contrib==2024.1
+pyinstaller-hooks-contrib==2024.2
     # via pyinstaller
 pyopengl==3.1.7
     # via napari
@@ -289,7 +291,7 @@ pytest==8.0.2
     #   pytest-timeout
 pytest-qt==4.4.0
 pytest-timeout==2.2.0
-python-dateutil==2.8.2
+python-dateutil==2.9.0.post0
     # via
     #   jupyter-client
     #   pandas

diff --git a/requirements/constraints_py3.10_pydantic_1.txt b/requirements/constraints_py3.10_pydantic_1.txt
@@ -18,7 +18,7 @@ attrs==23.2.0
     #   referencing
 babel==2.14.0
     # via sphinx
-build==1.0.3
+build==1.1.1
     # via npe2
 cachey==0.2.1
     # via napari
@@ -79,7 +79,9 @@ imageio==2.34.0
 imagesize==1.4.1
     # via sphinx
 importlib-metadata==7.0.1
-    # via dask
+    # via
+    #   build
+    #   dask
 in-n-out==0.1.9
     # via app-model
 iniconfig==2.0.0
@@ -88,7 +90,7 @@ ipykernel==6.29.3
     # via
     #   napari-console
     #   qtconsole
-ipython==8.22.1
+ipython==8.22.2
     # via
     #   ipykernel
     #   napari-console
@@ -122,7 +124,7 @@ local-migrator==0.1.10
 locket==1.0.0
     # via partd
 lxml==5.1.0
-magicgui==0.8.1
+magicgui==0.8.2
     # via napari
 mahotas==1.4.13
 markdown-it-py==3.0.0
@@ -254,7 +256,7 @@ pygments==2.17.2
     #   sphinx
     #   superqt
 pyinstaller==6.4.0
-pyinstaller-hooks-contrib==2024.1
+pyinstaller-hooks-contrib==2024.2
     # via pyinstaller
 pyopengl==3.1.7
     # via napari
@@ -285,7 +287,7 @@ pytest==8.0.2
     #   pytest-timeout
 pytest-qt==4.4.0
 pytest-timeout==2.2.0
-python-dateutil==2.8.2
+python-dateutil==2.9.0.post0
     # via
     #   jupyter-client
     #   pandas

diff --git a/requirements/constraints_py3.11.txt b/requirements/constraints_py3.11.txt
@@ -20,7 +20,7 @@ attrs==23.2.0
     #   referencing
 babel==2.14.0
     # via sphinx
-build==1.0.3
+build==1.1.1
     # via npe2
 cachey==0.2.1
     # via napari
@@ -86,7 +86,7 @@ ipykernel==6.29.3
     # via
     #   napari-console
     #   qtconsole
-ipython==8.22.1
+ipython==8.22.2
     # via
     #   ipykernel
     #   napari-console
@@ -120,7 +120,7 @@ local-migrator==0.1.10
 locket==1.0.0
     # via partd
 lxml==5.1.0
-magicgui==0.8.1
+magicgui==0.8.2
     # via napari
 mahotas==1.4.13
 markdown-it-py==3.0.0
@@ -254,7 +254,7 @@ pygments==2.17.2
     #   sphinx
     #   superqt
 pyinstaller==6.4.0
-pyinstaller-hooks-contrib==2024.1
+pyinstaller-hooks-contrib==2024.2
     # via pyinstaller
 pyopengl==3.1.7
     # via napari
@@ -285,7 +285,7 @@ pytest==8.0.2
     #   pytest-timeout
 pytest-qt==4.4.0
 pytest-timeout==2.2.0
-python-dateutil==2.8.2
+python-dateutil==2.9.0.post0
     # via
     #   jupyter-client
     #   pandas

diff --git a/requirements/constraints_py3.11_pydantic_1.txt b/requirements/constraints_py3.11_pydantic_1.txt
@@ -18,7 +18,7 @@ attrs==23.2.0
     #   referencing
 babel==2.14.0
     # via sphinx
-build==1.0.3
+build==1.1.1
     # via npe2
 cachey==0.2.1
     # via napari
@@ -84,7 +84,7 @@ ipykernel==6.29.3
     # via
     #   napari-console
     #   qtconsole
-ipython==8.22.1
+ipython==8.22.2
     # via
     #   ipykernel
     #   napari-console
@@ -118,7 +118,7 @@ local-migrator==0.1.10
 locket==1.0.0
     # via partd
 lxml==5.1.0
-magicgui==0.8.1
+magicgui==0.8.2
     # via napari
 mahotas==1.4.13
 markdown-it-py==3.0.0
@@ -250,7 +250,7 @@ pygments==2.17.2
     #   sphinx
     #   superqt
 pyinstaller==6.4.0
-pyinstaller-hooks-contrib==2024.1
+pyinstaller-hooks-contrib==2024.2
     # via pyinstaller
 pyopengl==3.1.7
     # via napari
@@ -281,7 +281,7 @@ pytest==8.0.2
     #   pytest-timeout
 pytest-qt==4.4.0
 pytest-timeout==2.2.0
-python-dateutil==2.8.2
+python-dateutil==2.9.0.post0
     # via
     #   jupyter-client
     #   pandas