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fix typo
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andreacosolo committed Oct 11, 2022
1 parent 9f18582 commit f8298ef
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions docs/source/tables/core_columns.csv
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Extra-Cell ROI Data tableName,Description,Example,Conditional requirement conditions
Name,Description,Example,Conditional requirement conditions
**Spot_ID**,A unique identifier for this bright Spot.,,
**Trace_ID**,"In case multiple DNA Spots are connected to form 3D polymer traces of chromatin fibers (such as in ORCA; https://doi.org/10.1038/s41596-020-00478-x), this fields reports a unique identifier for the DNA trace the Spot belongs to. Note: this is used to connect Spots that are part of the same polymeric Trace. It is also used to connect data in this table with any Trace specific measurements such as nascent RNA expression, recorded in the corresponding Trace Data table.",1,
**X**,"The sub-pixel X coordinate of this bright Spot. NOTE: the reported X position is understood to be the one resulting from any performed post-processing correction procedures (i.e. drift correction, chromatic correction etc).",,
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**Chrom_End**,"Stop coordinate on the Chromosome for the sequence associated with this bright Spot. This position is non-inclusive, unlike Chrom_Start. Because BED (Browser Extensible Data) is the de facto exchange bioinformatics format for genomic data, the BED terminology was used here.",1000,
*Sub_Cell_ROI_ID*,"If known, this field reports the unique identifier for a Region of Interest (ROI) that represents the boundaries of a sub-cellular structure a given Spot/Trace is associated with. Note: this is used to connect individual Spot/Traces that are part of the same ROI. It is also used to connect data in this table with any ROI specific measurements such as boundaries, intensities or volume, recorded in the corresponding Sub-Cell ROI Data table.",1,Conditional requirement: this column is mandatory if data in this table can be associated with a Sub_Cell_ROI identified as part of this experiment.
*Cell_ID*,"If known, this field reports the unique identifier for the Cell a given Spot/Trace is associated with. Note: this is used to connect individual Spot/Traces that are part of the same Cell. It is also used to connect data in this table with any Cell specific measurements such as boundaries, intensities and volume, recorded in the corresponding Cell Data table.",1,Conditional requirement: this column is mandatory if data in this table can be associated with a Cell identified as part of this experiment.
*Extra_Cell_ROI_ID*,"If known, this field reports the unique identifier for a Region of Interest (ROI) that represents the boundaries of a extracellular structure (e.g., Tissue) a given Spot/Trace is associated with. Note: this is used to connect individual Spot/Traces that are part of the same ROI. It is also used to connect data in this table with any ROI specific measurements such as boundaries, intensities and volume, recorded in the corresponding Extra-Cell ROI Data table.",1,"Conditional requirement: this column is mandatory if data in this table can be associated with a extracellular structure ROI (e.g., Tissue) identified as part of this experiment."
*Extra_Cell_ROI_ID*,"If known, this field reports the unique identifier for a Region of Interest (ROI) that represents the boundaries of a extracellular structure (e.g., Tissue) a given Spot/Trace is associated with. Note: this is used to connect individual Spot/Traces that are part of the same ROI. It is also used to connect data in this table with any ROI specific measurements such as boundaries, intensities and volume, recorded in the corresponding Extra-Cell ROI Data table.",1,"Conditional requirement: this column is mandatory if data in this table can be associated with a extracellular structure ROI (e.g., Tissue) identified as part of this experiment."

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