update cgap pipeline

4dn-dcic · Sep 24, 2020 · 046d3c3 · 046d3c3
1 parent 2447784
commit 046d3c3
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/chalicelib/checks/helpers/cgap_utils.py b/chalicelib/checks/helpers/cgap_utils.py
@@ -163,6 +163,7 @@ def analyze_pedigree(samples_pedigree_json, all_samples):
     # Define run Mode: Trio or Proband only
     # order samples by father/mother/proband
     run_mode = ""
+    error = ""
     input_samples = []
     qc_pedigree = []  # used by vcfqc
     # trio analysis