higlass_opf_fix: Not every opf group has a Higlass item.

4dn-dcic · Apr 3, 2019 · ab35d11 · ab35d11
1 parent 5f4087b
commit ab35d11
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/chalicelib/checks/higlass_checks.py b/chalicelib/checks/higlass_checks.py
@@ -995,7 +995,7 @@ def patch_expsets_otherprocessedfiles_for_higlass_viewconf(connection, **kwargs)
         # The other_processed_files section has been updated. Patch the changes.
         try:
             # Make sure all higlass_view_config fields just show the uuid.
-            for g in expsets_to_update[accession]["other_processed_files"]:
+            for g in [ group for group in expsets_to_update[accession]["other_processed_files"] if "higlass_view_config" in group ]:
                 if isinstance(g["higlass_view_config"], dict):
                     uuid = g["higlass_view_config"]["uuid"]
                     g["higlass_view_config"] = uuid