Fix ReadTheDocs build (#374)

* Build docs dix

* Update main-deploy-docs.yml

* Beta version

* Get version correctly in docs

* Update main-deploy-docs.yml

* Version bump

.github/workflows/main-deploy-docs.yml

@@ -21,6 +21,5 @@ jobs:
       - name: Docs
         env:
           DOCS_TOKEN: ${{ secrets.DOCS_TOKEN }}
-          TIBANNA_VERSION: 2.2.1
         run: curl -X POST -d "branches=master" -d "token=$DOCS_TOKEN" https://readthedocs.org/api/v2/webhook/tibanna/141616/ 
 

docs/conf.py

@@ -15,7 +15,6 @@
 
 # import sys
 # import os
-from tibanna._version import __version__ 
 
 # If extensions (or modules to document with autodoc) are in another directory,
 # add these directories to sys.path here. If the directory is relative to the
@@ -68,7 +67,16 @@ def _read(*parts, **kwargs):
     return text
 
 
-version = __version__
+def get_version():
+    specs = open("../pyproject.toml").readlines()
+    for spec in specs:
+        if "version =" in spec:
+            return spec.split("\"")[1]
+    return "0.0.0"
+
+
+version = get_version()
+
 # The full version, including alpha/beta/rc tags.
 release = version
 

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "tibanna"
-version = "2.2.2"
+version = "2.2.3"
 description = "Tibanna runs portable pipelines (in CWL/WDL) on the AWS Cloud."
 authors = ["4DN-DCIC Team <support@4dnucleome.org>"]
 license = "MIT"