Merge pull request #35 from shsa992/master

minor tweak in mouse heart doc

source/MouseHeart.rst

@@ -21,10 +21,9 @@ scaffold that has been fitted to the segmented heart surface data from Sham Hear
 geometric dataset. Future experiments are likely to provide much better quality mouse data for both the heart's anatomy
 and its embedded neurons. Figure 1 illustrates an overview of the workflow.
 
-
 .. figure:: _images/use_case3_workflow_white.png
    :figwidth: 95%
-   :width: 90%
+   :width: 95%
    :align: center
 
 Below is an **introductory video** which explains the mapping of the mouse heart neurites from image to scaffold.
@@ -39,57 +38,49 @@ Step-by-step instructions
 
 Follow these step-by-step instructions to familiarise yourself with the flow of the web interface.
 
-
 **Step 1**. The default **Result** column displays some of the use cases available on the portal. Click on
 *Mapping the Mouse Heart Neurites from Image to Scaffold* box.
 
 .. figure:: _images/use_case_3/Slide1.PNG
-   :figwidth: 61%
-   :width: 51%
+   :figwidth: 95%
+   :width: 85%
    :align: center
 
 **Step 2** Now click on the |scaffold-icon| to open the **Scaffold Viewer** tab to visualise the heart scaffold.
 
 .. figure:: _images/use_case_3/Slide2.PNG
-   :figwidth: 61%
-   :width: 51%
+   :figwidth: 95%
+   :width: 85%
    :align: center
 
-**Step 3**. In the **Scaffold Viewer** tab, there are three objects visible: 1) fitted heart scaffold, 2) sham heart 44
+**Step 3**. In the **Scaffold Viewer** tab, click on |open-control| to open the control panel. There are three objects visible: 1) fitted heart scaffold, 2) sham heart 44
 neurite tracing, 3) sham heart 4 neurite tracing.
 
-.. figure:: _images/use_case_3/Slide3.PNG
-   :figwidth: 61%
-   :width: 51%
-   :align: center
-
-**Step 4**. Click on |open-control| to open the control panel.
-
 .. figure:: _images/use_case_3/Slide4.PNG
-   :figwidth: 61%
-   :width: 51%
+   :figwidth: 95%
+   :width: 85%
    :align: center
 
-**Step 5**. Turn off Sham 4 neurons to only visualise the scaffold and Sham 44 neurons.
+**Step 4**. **Turn off Sham 4 neurons** to only visualise the scaffold and Sham 44 neurons.
 
 .. figure:: _images/use_case_3/Slide5.PNG
-   :figwidth: 61%
-   :width: 51%
+   :figwidth: 95%
+   :width: 85%
    :align: center
 
-**Step 6**. Turn Sham 4 neurons back on and now turn off Sham 44 neurons to visualise the registered neurons on the scaffold
+**Step 6**. **Turn Sham 4 neurons back on** and now **turn off Sham 44 neurons** to visualise the registered neurons on the scaffold
 surface.
 
 .. figure:: _images/use_case_3/Slide6.PNG
-   :figwidth: 61%
-   :width: 51%
+   :figwidth: 95%
+   :width: 85%
    :align: center
 
-**Step 7**. To visualise only the neurons, turn off the scaffold.
+**Step 7**. To visualise only the neurons, **turn off the scaffold**.
 
 .. figure:: _images/use_case_3/Slide7.PNG
-   :figwidth: 61%
-   :width: 51%
+   :figwidth: 95%
+   :width: 85%
    :align: center
 
 

source/PigHeart.rst

@@ -6,7 +6,6 @@ Mapping Cardiac Electromechanics in the Pig
 .. |scaffold-map-icon| image:: /_images/scaffold_map_icon.png
 						:width: 2 em
 
-
 .. contents:: Contents: 
    :local:
    :depth: 2
@@ -28,9 +27,6 @@ the response at the whole heart level.
 This document guides a user of the SPARC Data Portal through the steps required to discover some data looking at
 autonomic control of the heart.
 
-.. todo::
-    add link to final portal URL that takes user straight to this dataset display.
-
 Step-by-step instructions 
 *************************
 
@@ -39,13 +35,12 @@ Follow these step-by-step instructions to familiarise yourself with the flow of
 **Step 1:** The default **Result** column displays some of the use cases available on the portal. Click on
 *Mapping Cardiac Electromechanics in the Pig* box.
 
-
 .. figure:: _images/pig_slide1.png
    :figwidth: 95%
    :width: 90%
    :align: center
 
-**Step 2:** Now click on the |scaffold-icon| to open the **Scaffold Viewer** tab to visualise the heart scaffold.
+**Step 2:** Click on the |scaffold-map-icon| to open the **Scaffold Viewer** tab to visualise the heart scaffold.
 
 .. figure:: _images/pig_slide2.png
    :figwidth: 95%
@@ -57,7 +52,7 @@ In addition a 64-electrode patch mesh has been constructed from the original ele
 ventricular epicardium. Electro-physiological data recorded from this patch has been registered on the mesh and a field
 is displayed on the surface of this mesh. This mesh is then *embedded* on the corresponding surface of the scaffold.
 
-Press *play* to see the video.
+Press **play** to see the video.
 
 .. figure:: _images/pig_slide3.png
    :figwidth: 95%
@@ -74,7 +69,7 @@ tissue.
    :width: 90%
    :align: center
 
-**Step 4:** By clicking on |open-control| you can control visibility of each of the graphical objects in the scene.
+**Step 5:** By clicking on |open-control| you can control visibility of each of the graphical objects in the scene.
 
 .. figure:: _images/pig_slide5.png
    :figwidth: 95%