BodyMap

Scripts develop to map the Tox21 database on the organ human body.

Dependencies

• Python > 3.6
• R
• Netbio DB access (https://www.nextbio.com/b/authentication/login.nb)
• Toxcast lib that can be found in https://github.com/ABorrel/ToxCast_lib (change main line 13)

To do list

• Add data in the github repertory
• Add reference of publication when accepted

updates

• 8-22-19:
  • Update Map and transform in python 3.6
  • Update the ToxCast resources with last update of invitroDB
• 8-23-19:
  • Del script used to load Toxcast, use external librairy
  • Update mapping and optimze structure for website
• 8-29-19:
  • improve BodyMap maapping
• 4-1-20:
  • Clean script
• 4-2-20:
  • Analyse assay mapping on organ
  • Fold analysis by organ
• 4-8-20:
  • Add data set in the git repertory
  • change path in the main