Variant Analysis Pipeline

Trim, map, dedup, and variant call on paired end whole genome sequencing data

Name		Name	Last commit message	Last commit date
Latest commit History 35 Commits
1_trimmomatic_loop.sh		1_trimmomatic_loop.sh
2_mapping_loop.sh		2_mapping_loop.sh
3_markdup.sh		3_markdup.sh
4_freebayes.sh		4_freebayes.sh
5_regions_of_interest		5_regions_of_interest
6_snpsift.sh		6_snpsift.sh
7_delly.sh		7_delly.sh
README.md		README.md
fix_read_groups.sh		fix_read_groups.sh

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