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Minor grammar fix. Added references.
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AEBilgrau committed Mar 29, 2016
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6 changes: 6 additions & 0 deletions R/GMCM-package.R
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#' Maintainer: Anders Ellern Bilgrau <anders.ellern.bilgrau@@gmail.com>
#' @docType package
#' @references
#' Anders Ellern Bilgrau, Poul Svante Eriksen, Jakob Gulddahl Rasmussen,
#' Hans Erik Johnsen, Karen Dybkaer, Martin Boegsted (2016). GMCM:
#' Unsupervised Clustering and Meta-Analysis Using Gaussian Mixture Copula
#' Models. Journal of Statistical Software, 70(2), 1-23.
#' doi:10.18637/jss.v070.i02
#'
#' Li, Q., Brown, J. B. J. B., Huang, H., & Bickel, P. J. (2011).
#' Measuring reproducibility of high-throughput experiments. The Annals of
#' Applied Statistics, 5(3), 1752-1779. doi:10.1214/11-AOAS466
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11 changes: 6 additions & 5 deletions README.md
Expand Up @@ -12,7 +12,8 @@ Gaussian copula mixture models (GMCMs) are a very flexible alternative to gaussi

The optimization of the complicated likelihood function is difficult, however. The **GMCM** package utilizes [**Rcpp**](https://github.com/RcppCore/Rcpp) and [**RcppArmadillo**](https://github.com/RcppCore/RcppArmadillo) to evaluate the likelihood function quickly and arrive at a parameter estimate using various standard numerical optimization routines.

Additional information and documentation can be found by running `help(package = "GMCM")` in R for help and examples.
Additional information, documentation, help, and examples can be found by running `help(package = "GMCM")` or `?GMCM` in **R**.
The paper [1] is also found as a vignette by `vignette("GMCM-JStatSoft")`.
The core user functions of **GMCM** are `fit.full.GMCM` and `fit.meta.GMCM`.

## Installation
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## References

* Anders Ellern Bilgrau, Poul Svante Eriksen, Jakob Gulddahl Rasmussen, Hans
Erik Johnsen, Karen Dybkaer, Martin Boegsted (2016). **GMCM: Unsupervised
Clustering and Meta-Analysis Using Gaussian Mixture Copula Models.**
Journal of Statistical Software, 70(2), 1-23. doi:10.18637/jss.v070.i02
1. Anders Ellern Bilgrau, Poul Svante Eriksen, Jakob Gulddahl Rasmussen, Hans
Erik Johnsen, Karen Dybkaer, Martin Boegsted (2016). **GMCM: Unsupervised
Clustering and Meta-Analysis Using Gaussian Mixture Copula Models.**
Journal of Statistical Software, 70(2), 1-23. doi:10.18637/jss.v070.i02

## Usage
### Meta Analysis example
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8 changes: 7 additions & 1 deletion man/GMCM-package.Rd
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Maintainer: Anders Ellern Bilgrau <anders.ellern.bilgrau@gmail.com>
}
\references{
Li, Q., Brown, J. B. J. B., Huang, H., & Bickel, P. J. (2011).
Anders Ellern Bilgrau, Poul Svante Eriksen, Jakob Gulddahl Rasmussen,
Hans Erik Johnsen, Karen Dybkaer, Martin Boegsted (2016). GMCM:
Unsupervised Clustering and Meta-Analysis Using Gaussian Mixture Copula
Models. Journal of Statistical Software, 70(2), 1-23.
doi:10.18637/jss.v070.i02

Li, Q., Brown, J. B. J. B., Huang, H., & Bickel, P. J. (2011).
Measuring reproducibility of high-throughput experiments. The Annals of
Applied Statistics, 5(3), 1752-1779. doi:10.1214/11-AOAS466

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