ci: flake8

docs/conf.py

@@ -60,6 +60,9 @@
               'rtd_pdf',
               ]
 
+# specify bibtex files (required for sphinxcontrib.bibtex>=2.0)
+bibtex_bibfiles = ['pyjibe.bib']
+
 # enable enumeration of figures
 numfig = True
 
@@ -86,11 +89,11 @@
 # built documents.
 #
 # The short X.Y version.
-# 
+#
 # The full version, including alpha/beta/rc tags.
 # This gets 'version'
 exec(open(op.join(pdir, "pyjibe/_version.py")).read())
-release = version #@UndefinedVariable
+release = version  # noqa: F821
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.
 #
@@ -126,7 +129,7 @@
 # Add any paths that contain custom static files (such as style sheets) here,
 # relative to this directory. They are copied after the builtin static files,
 # so a file named "default.css" will overwrite the builtin "default.css".
-#html_static_path = ['data']
+# html_static_path = ['data']
 
 
 # -- Options for HTMLHelp output ------------------------------------------
@@ -186,12 +189,11 @@
 ]
 
 
-
-
 # Example configuration for intersphinx: refer to the Python standard library.
-intersphinx_mapping = {"python": ('https://docs.python.org/', None),
-                       "numpy": ('https://docs.scipy.org/doc/numpy', None),
-                       "scipy": ('https://docs.scipy.org/doc/scipy/reference/', None),
-                       "nanite": ('https://nanite.readthedocs.io/en/stable', None),
-                       "afmformats": ('https://afmformats.readthedocs.io/en/stable', None),
-                       }
+intersphinx_mapping = {
+    "python": ('https://docs.python.org/', None),
+    "numpy": ('https://docs.scipy.org/doc/numpy', None),
+    "scipy": ('https://docs.scipy.org/doc/scipy/reference/', None),
+    "nanite": ('https://nanite.readthedocs.io/en/stable', None),
+    "afmformats": ('https://afmformats.readthedocs.io/en/stable', None),
+    }

docs/extensions/rtd_pdf.py

@@ -17,7 +17,6 @@ def run(self):
         else:
             is_rtd = False
 
-
         rst = []
 
         if is_rtd:

docs/requirements.txt

@@ -7,5 +7,5 @@ scipy
 # Remove sphinx from requirements b/c it lead to issues
 # on rtd and it's a dependency of the rtd theme anyway.
 # sphinx>=1.6.4,<2
-sphinxcontrib.bibtex
+sphinxcontrib.bibtex>=2.0
 sphinx_rtd_theme

docs/tutorials/t01_make_figures.py

@@ -82,11 +82,11 @@
 print("Compliant mean +- SD: {:.5g} +- {:.5g}".format(
     np.mean(data_compl["Young\'s Modulus [Pa]"]),
     np.std(data_compl["Young\'s Modulus [Pa]"])
-    ))
+))
 
 print("Stiff mean +- SD: {:.5g} +- {:.5g}".format(
     np.mean(data_stiff["Young\'s Modulus [Pa]"]),
     np.std(data_stiff["Young\'s Modulus [Pa]"])
-    ))
+))
 
 shutil.rmtree(tempdir)