docs: install package on rtfd

AFM-analysis · Nov 2, 2018 · 8c320cc · 8c320cc
1 parent 49879a3
commit 8c320cc
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Showing 5 changed files with 4 additions and 21 deletions.
diff --git a/.readthedocs.yml b/.readthedocs.yml
@@ -3,3 +3,4 @@ formats:
 requirements_file: docs/requirements.txt
 python:
    version: 3
+   pip_install: true
diff --git a/docs/conf.py b/docs/conf.py
@@ -31,20 +31,6 @@
 # include extenstions
 sys.path.append(op.abspath('extensions'))
 
-if False:
-    # Mock all dependencies
-    install_requires=["appdirs",
-                      "h5py",
-                      "jprops",
-                      "lmfit",
-                      "scipy",
-                      "skimage",
-                      ]
-
-    for mod_name in install_requires:
-        sys.modules[mod_name] = mock.Mock()
-    autodoc_mock_imports = install_requires
-
 # http://www.sphinx-doc.org/en/stable/ext/autodoc.html#confval-autodoc_member_order
 # Order class attributes and functions in separate blocks
 autodoc_member_order = 'groupwise'

diff --git a/docs/requirements.txt b/docs/requirements.txt
@@ -5,8 +5,4 @@ sphinx-argparse==0.2.1
 # CommonMark 0.8.3 did not work with argparse
 CommonMark==0.7.5
 sphinxcontrib.bibtex
-numpy
-matplotlib
-h5py
-ipython
-scipy
+
diff --git a/docs/sec_cli.rst b/docs/sec_cli.rst
@@ -34,7 +34,7 @@ rate
 .. _sec_cli_generate_training_set:
 
 nanite-generate-training-set
-----
+----------------------------
 .. argparse::
    :module: nanite.cli.rating
    :func: generate_training_set_parser

diff --git a/setup.py b/setup.py
@@ -50,8 +50,8 @@
                       "lmfit==0.9.5",
                       "numpy>=1.12.0",
                       "pandas",
-                      "scipy",
                       "scikit-learn>=0.18.0",
+                      "scipy",
                       ],
     ext_modules = extensions,
     setup_requires=["cython", "numpy", "pytest-runner"],