Add pre-cropping #317
Merged
Add pre-cropping #317
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
When resampling is enabled, image and mask are pre-cropped onto the bounding box (with additional padding). This speeds up the resampling process and the application of filters. Moreover, it can significantly reduce the memory footprint of the extraction, especially when the images are large, but contain only small ROIs. Add functionality to also pre-crop the image when no resampling is applied. This way, the advantages when applying filters on a pre-cropped image and mask are also available when extracting without resampling. Similar as pre-cropping when resampling, additional padding is available (parameter `padDistance`), which is ensure to not exceed the original image bounds.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
When resampling is enabled, image and mask are pre-cropped onto the bounding box (with additional padding). This speeds up the resampling process and the application of filters. Moreover, it can significantly reduce the memory footprint of the extraction, especially when the images are large, but contain only small ROIs.
Add functionality to also pre-crop the image when no resampling is applied. This way, the advantages when applying filters on a pre-cropped image and mask are also available when extracting without resampling.
Similar as pre-cropping when resampling, additional padding is available (parameter
padDistance), which is ensure to not exceed the original image bounds.cc @Radiomics/developers