Minor update to the schema exclude order for the CLI case

[chile12]

Description

• Schema exclusion was performed after applying explicitly included schemata, which resulted in confusing behaviour (especially in the default case, excluding owl when explicitly requested)
• in addition the default schemata directory was not copied to the validate module and therefore not available in the CLI case

How Has This Been Tested?

is covered by the ValidateUtilsTest

Types of changes

• Bug fix (non-breaking change which fixes an issue)
• New feature (non-breaking change which adds functionality)
• Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

• My code follows the code style of this project.
• My change requires a change to the documentation.
• I have updated the documentation accordingly.
• I have added tests to cover my changes.
• All new and existing tests passed.

[jimkont]

👍 thanks @chile12 !

[coveralls]

Coverage decreased (-0.02%) to 55.916% when pulling 17725cb on fix/CliExcludeBehaviour into 133e9d6 on master.