Problem with compiling on NERSC

[anhph]

Hi,

I receive this error when compiling on NERSC Cori:

compilation aborted for ALPSCore/gf/test/fourier_test.cpp (code 2)
make[2]: *** [gf/test/CMakeFiles/fourier_test.dir/build.make:63: gf/test/CMakeFiles/fourier_test.dir/fourier_test.cpp.o] Error 2
make[1]: *** [CMakeFiles/Makefile2:5722: gf/test/CMakeFiles/fourier_test.dir/all] Error 2
make: *** [Makefile:141: all] Error 2

Any help would be appreciated

[egull]

Hard to say what’s going on here. Could you please be more explicit and send us the full error message? Your best way of getting information is likely export VERBOSE=1 Followed by make. Then tell us what actually fails, and with which compiler and which environment. Best, Emanuel

…

On Sep 21, 2020, at 4:12 PM, anhph ***@***.***> wrote: Hi, I receive this error when compiling on NERSC Cori: compilation aborted for ALPSCore/gf/test/fourier_test.cpp (code 2) make[2]: *** [gf/test/CMakeFiles/fourier_test.dir/build.make:63: gf/test/CMakeFiles/fourier_test.dir/fourier_test.cpp.o] Error 2 make[1]: *** [CMakeFiles/Makefile2:5722: gf/test/CMakeFiles/fourier_test.dir/all] Error 2 make: *** [Makefile:141: all] Error 2 Any help would be appreciated — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#623>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ABW32RLMUXI3GYR5PPWXEFLSG6XR5ANCNFSM4RU6HPYQ>.

[anhph]

Here is my make VERBOSE=1. This is where the error occurs

[ 81%] Building CXX object gf/test/CMakeFiles/fourier_test.dir/fourier_test.cpp.o
cd /global/homes/a/axp561/ALPSCore/build/gf/test && /opt/cray/pe/craype/2.6.2/bin/CC -I/global/homes/a/axp561/ALPSCore/build/hdf5/include -I/global/homes/a/axp561/ALPSCore/hdf5/include -I/global/homes/a/axp561/ALPSCore/build/utilities/include -I/global/homes/a/axp561/ALPSCore/utilities/include -isystem /global/homes/a/axp561/ALPSCore/common/deps/gtest-1.7.0/include -I/global/homes/a/axp561/ALPSCore/gf/include -I/global/homes/a/axp561/ALPSCore/build/gf/include -I/global/homes/a/axp561/eigen -O2 -g -DNDEBUG -DBOOST_DISABLE_ASSERTS -std=c++11 -o CMakeFiles/fourier_test.dir/fourier_test.cpp.o -c /global/homes/a/axp561/ALPSCore/gf/test/fourier_test.cpp
/global/homes/a/axp561/eigen/Eigen/src/Core/CwiseUnaryView.h(113): error: expression must be an lvalue or a function designator

[iskakoff]

Hi,

I receive this error when compiling on NERSC Cori:

compilation aborted for ALPSCore/gf/test/fourier_test.cpp (code 2)
make[2]: *** [gf/test/CMakeFiles/fourier_test.dir/build.make:63: gf/test/CMakeFiles/fourier_test.dir/fourier_test.cpp.o] Error 2
make[1]: *** [CMakeFiles/Makefile2:5722: gf/test/CMakeFiles/fourier_test.dir/all] Error 2
make: *** [Makefile:141: all] Error 2

Any help would be appreciated

what is your cmake flags and so on?
I've just rebuilt ALPSCore on Cori and everything went well. Here are the modules I have loaded:

Currently Loaded Modulefiles:
  1) modules/3.2.11.4                                  8) udreg/2.3.2-7.0.1.1_3.36__g8175d3d.ari           15) dvs/2.12_2.2.157-7.0.1.1_9.4__g083131db          22) craype-hugepages2M
  2) altd/2.0                                          9) ugni/6.0.14.0-7.0.1.1_7.38__ge78e5b0.ari         16) alps/6.6.58-7.0.1.1_6.8__g437d88db.ari           23) cray-hdf5/1.10.5.2
  3) darshan/3.1.7                                    10) pmi/5.0.14                                       17) rca/2.2.20-7.0.1.1_4.51__g8e3fb5b.ari            24) cmake/3.14.4
  4) intel/19.0.3.199                                 11) dmapp/7.1.1-7.0.1.1_4.52__g38cf134.ari           18) atp/2.1.3                                        25) cray-fftw/3.3.8.4
  5) craype-network-aries                             12) gni-headers/5.0.12.0-7.0.1.1_6.31__g3b1768f.ari  19) PrgEnv-intel/6.0.5                               26) python3/3.7-anaconda-2019.10
  6) craype/2.6.2                                     13) xpmem/2.2.20-7.0.1.1_4.13__g0475745.ari          20) craype-haswell
  7) cray-libsci/19.06.1                              14) job/2.2.4-7.0.1.1_3.40__g36b56f4.ari             21) cray-mpich/7.7.10

There is one failed test, but this is known problem on intel compilers:

The following tests FAILED:
	 59 - binop_with_scalar (Failed)

[anhph]

Here are my modules

1. modules/3.2.11.4
2. altd/2.0
3. darshan/3.1.7
4. intel/19.0.3.199
5. craype-network-aries
6. craype/2.6.2
7. cray-libsci/19.06.1
8. udreg/2.3.2-7.0.1.1_3.36__g8175d3d.ari
9. ugni/6.0.14.0-7.0.1.1_7.38__ge78e5b0.ari
10. pmi/5.0.14
11. dmapp/7.1.1-7.0.1.1_4.52__g38cf134.ari
12. gni-headers/5.0.12.0-7.0.1.1_6.31__g3b1768f.ari
13. xpmem/2.2.20-7.0.1.1_4.13__g0475745.ari
14. job/2.2.4-7.0.1.1_3.40__g36b56f4.ari
15. dvs/2.12_2.2.157-7.0.1.1_9.4__g083131db
16. alps/6.6.58-7.0.1.1_6.8__g437d88db.ari
17. rca/2.2.20-7.0.1.1_4.51__g8e3fb5b.ari
18. atp/2.1.3
19. PrgEnv-intel/6.0.5
20. craype-haswell
21. cray-mpich/7.7.10
22. craype-hugepages2M
23. python/3.7-anaconda-2019.10
24. cmake/3.14.4
25. boost/1.70.0
26. cray-hdf5-parallel/1.10.5.2
27. cray-fftw/3.3.8.4

Here is my Cmake:

cmake .. -DEIGEN3_INCLUDE_DIR=/global/homes/a/axp561/.conda/envs/eigen/include/eigen3 -DCMAKE_INSTALL_PREFIX=/global/homes/a/axp561/ALPSCore_install -DBOOST_ROOT=/usr/common/software/boost/1.70.0/intel/haswell -DCMAKE_CXX_STANDARD=14

But I get a lot of errors, all related to mpi

 12 - mpi_utils_env (Child aborted)
 13 - mpi_utils_comm (Child aborted)
 14 - mpi_utils_bcast (Child aborted)
 15 - mpi_utils_bcast_optional (Child aborted)
 16 - mpi_utils_reduce (Child aborted)
 17 - mpi_utils_env_exceptions1 (Child aborted)
 18 - mpi_utils_env_exceptions2 (Child aborted)
 59 - binop_with_scalar (Failed)
 68 - mpi_merge (Child aborted)
 69 - mpi_merge_uneven (Child aborted)
 70 - repeated_merge (Child aborted)
 71 - zero_vector_mpi (Child aborted)
 91 - serialize_variant_mpi (Child aborted)
 92 - dictionary_bcast_mpi (Child aborted)
 93 - params_bcast_mpi (Child aborted)
 98 - sum_mpi (Child aborted)
 99 - reduce (Child aborted)
100 - signed_obs (Child aborted)
101 - custom_scheduler (Child aborted)
102 - reduce_unavailable_results (Child aborted)
119 - one_index_gf_test_mpi (Child aborted)
120 - four_index_gf_test_mpi (Child aborted)
121 - four_index_gf_test_mismatched_mpi (Child aborted)
122 - four_index_gf_test_mismatched-tail_mpi (Child aborted)
123 - multiarray_bcast_mpi (Child aborted)
124 - mesh_test_mpi (Child aborted)
125 - gf_new_test_mpi (Child aborted)
126 - gf_new_tail_test_mpi (Child aborted)
135 - mpi_twogauss (Child aborted)

Do I need to explicitly set the CC compiler directory for this ?

[galexv]

Judging by the fact that compilation itself succeeds and only the MPI tests fail, it seems to be the same issue as #211 (feature request #296), addressed by (not yet merged) PR #613 .

I believe PR #613 does not affect the business logic (it changes only CMake scripts), so it could be safely merged.

@anhph You could try to apply that PR to your local repository and see if it works for you; the PR description shows how to use the new features on Cori.

[iskakoff]

@anhph to run MPI tests on Cori you need to run interactive job, any attempt to call MPI_Init on login node will fail immediately
@galexv I think @anhph run whatever tests compiled but anhph still has at least fourier_test that fails to compile.
I will take more close look today or tomorrow on fourier_test whether I can reproduce it or not.