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Move mean_immune_time and immune_time_spread to 'disease' rather than… #410

Move mean_immune_time and immune_time_spread to 'disease' rather than…

Move mean_immune_time and immune_time_spread to 'disease' rather than… #410

Workflow file for this run

# -Wextra-semi: GCC < 10 does not have this.
# -Wunreachable-code: GCC no longer has this option.
name: Linux GCC
on: [push, pull_request]
concurrency:
group: ${{ github.ref }}-${{ github.head_ref }}-linux-gcc
cancel-in-progress: true
jobs:
# Build ExaEpi
# Note: this is an intentional "minimal" build that does not enable (many) options
library:
name: GNU@8.4 C++17 Release
runs-on: ubuntu-20.04
env: {CXXFLAGS: "-fno-operator-names -Werror -Wall -Wextra -Wpedantic -Wnull-dereference -Wfloat-conversion -Wshadow -Woverloaded-virtual -Wnon-virtual-dtor -Wlogical-op -Wmisleading-indentation -Wduplicated-cond -Wduplicated-branches -Wmissing-include-dirs"}
steps:
- uses: actions/checkout@v3
- name: Dependencies
run: .github/workflows/dependencies/dependencies_gcc8.sh
- name: Build & Install
run: |
mkdir build
cd build
cmake .. \
-DCMAKE_VERBOSE_MAKEFILE=ON \
-DCMAKE_C_COMPILER=$(which gcc-8) \
-DCMAKE_CXX_COMPILER=$(which g++-8) \
-DCMAKE_Fortran_COMPILER=$(which gfortran-8)
make -j 2
# Build ExaEpi [Debug]
build_debug:
name: GNU@9.3 C++17 Debug
runs-on: ubuntu-20.04
env: {CXXFLAGS: "-fno-operator-names -Werror -Wall -Wextra -Wpedantic -Wnull-dereference -Wfloat-conversion -Wshadow -Woverloaded-virtual -O1 -Wnon-virtual-dtor -Wlogical-op -Wmisleading-indentation -Wduplicated-cond -Wduplicated-branches -Wmissing-include-dirs"}
# It's too slow with -O0
steps:
- uses: actions/checkout@v3
- name: Dependencies
run: .github/workflows/dependencies/dependencies.sh
- name: Build & Install
run: |
cmake -S . -B build \
-DCMAKE_BUILD_TYPE=Debug \
-DCMAKE_VERBOSE_MAKEFILE=ON
cmake --build build -j 2
# Build ExaEpi
tests_cxx20:
name: GNU@10.1 C++20 OMP
runs-on: ubuntu-20.04
env: {CXXFLAGS: "-fno-operator-names -Werror -Wall -Wextra -Wpedantic -Wnull-dereference -Wfloat-conversion -Wshadow -Woverloaded-virtual -Wextra-semi -Wnon-virtual-dtor -Wlogical-op -Wmisleading-indentation -Wduplicated-cond -Wduplicated-branches -Wmissing-include-dirs"}
steps:
- uses: actions/checkout@v3
- name: Dependencies
run: .github/workflows/dependencies/dependencies_gcc10.sh
- name: Build & Install
run: |
mkdir build
cd build
cmake .. \
-DCMAKE_BUILD_TYPE=RelWithDebInfo \
-DCMAKE_VERBOSE_MAKEFILE=ON \
-DAMReX_ASSERTIONS=ON \
-DAMReX_TESTING=ON \
-DAMReX_BOUND_CHECK=ON \
-DAMReX_FPE=ON \
-DAMReX_OMP=ON \
-DCMAKE_CXX_STANDARD=20 \
-DCMAKE_C_COMPILER=$(which gcc-10) \
-DCMAKE_CXX_COMPILER=$(which g++-10) \
-DCMAKE_Fortran_COMPILER=$(which gfortran-10)
make -j 2
# Build ExaEpi w/o MPI
tests-nonmpi:
name: GNU@8.4 C++17 NOMPI
runs-on: ubuntu-20.04
env: {CXXFLAGS: "-fno-operator-names -Werror -Wall -Wextra -Wpedantic -Wnull-dereference -Wfloat-conversion -Wshadow -Woverloaded-virtual -Wnon-virtual-dtor -Wlogical-op -Wmisleading-indentation -Wduplicated-cond -Wduplicated-branches -Wmissing-include-dirs"}
steps:
- uses: actions/checkout@v3
- name: Dependencies
run: .github/workflows/dependencies/dependencies_gcc8.sh
- name: Build & Install
run: |
mkdir build
cd build
cmake .. \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_VERBOSE_MAKEFILE=ON \
-DAMReX_ASSERTIONS=ON \
-DAMReX_TESTING=ON \
-DAMReX_BOUND_CHECK=ON \
-DAMReX_FPE=ON \
-DAMReX_MPI=OFF \
-DCMAKE_C_COMPILER=$(which gcc-8) \
-DCMAKE_CXX_COMPILER=$(which g++-8) \
-DCMAKE_Fortran_COMPILER=$(which gfortran-8)
make -j 2