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sq2 README

Repository for software described in;

Distinguishing functional polymorphism from random variation in the sequences of >10,000 HLA-A, -B and -C alleles

James Robinson (1,2) Lisbeth A Guethlein (3) Nezih Cereb (4) Soo Young Yang (4) Paul J Norman (3) Steven GE Marsh (1,2) Peter Parham (3)

  1. Anthony Nolan Research Institute, Anthony Nolan, London, UK
  2. UCL Cancer Institute, University College London, London, UK
  3. Dept. of Structural Biology & Dept. of Microbiology & Immunology, School of Medicine, Stanford University, Stanford, USA
  4. Histogenetics, Ossining, New York, USA

PLOS Genetics (http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1006862)

Note: The code available from this repository is provided with out any warranty or liability. The code was designed to complete analysis of a targeted set of HLA data. The code is therefore provided 'as-is' and development for other regions is not actively supported.

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