Sharpening options in template construction #1149
Merged
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This is mostly to address #956, but also adding a few other changes to improve performance.
Users may choose no sharpening, Laplacian (default), or unsharp mask.
Summary statistic: Made mean, median available in antsMultivariateTemplateConstruction.sh
Backwards compatibility is mostly preserved by leaving normalized mean (-a 1) and Laplacian sharpening (-A 1) as the defaults. I did slightly modify how sharpening is used in initial templates:
Don't sharpen initial templates after population averaging or initial rigid alignment. These initial templates are often very messy and arguably should be smoothed, not sharpened
In antsMultivariateTemplateConstruction2.sh, use median for initialization - again to help convergence and avoid outliers causing too much trouble.
Misc fixes: