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Latest commit c1c99bc Jun 14, 2018
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dockerfiles enforce requirement roles install by ansible-galaxy in the docker fil… Feb 1, 2018
docs Fix typo Mar 12, 2018
extra-files change the tool list for docker inventory Jan 21, 2018
group_vars change release version of Galaxy to 18_05, update miniconda version, … Jun 13, 2018
inventory_files temporary fix errordocs installation when ubuntu 16.04 Aug 16, 2017
roles run the task Install Data-managers and Genomes as root user Mar 13, 2018
scripts update from ephemeris May 5, 2017
templates templating welcome.html in copy_additional_files role Jun 22, 2017
travis_scripts resolve merge conflicts Mar 13, 2018
.gitignore fix bad error in GKSfromWorflows documentation Jun 15, 2017
.travis.yml resolve merge conflicts Mar 13, 2018 Put Mallory in contributors, add mini-conda role in Readme and test u… Nov 6, 2017
Dockerfile Revert "test Dockerfile for galaxy-kickstart-workflow1" Aug 26, 2016
Dockerfile.galaxykickstart-base force requirements in Dockerfile.galaxykickstart-base too Feb 4, 2018
LICENSE.txt add licence and contributors file to artimed for public release Dec 7, 2015 Put Mallory in contributors, add mini-conda role in Readme and test u… Nov 6, 2017
Vagrantfile Add rsync tool to galaxy tools. It will be used to upload ref genomes… Nov 27, 2015
ansible.cfg reintegrate ansible.cfg for the become user problem and comment the c… Oct 30, 2017
galaxy.yml First draft an independent gks datamanager installer Jan 20, 2018
galaxyToSlurmCluster.yml still struggling with nginx_upload_store and oases tool install (whic… Apr 8, 2017
mkdocs.yml fix bad error in GKSfromWorflows documentation Jun 15, 2017 Pre-commit script for syntax checking. To be placed in .git/hooks Jan 14, 2016
requirements_roles.yml pin all upstream role to master branches of ARTbio forked repo May 13, 2018
slurm_slave_node.yml add slurm_slave_node.yml playbook at GKG root Apr 3, 2017 Fix nginx upload serving with prefix in docker May 16, 2017

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GalaxyKickStart is an Ansible playbook designed to help you get one or more production-ready Galaxy servers based on Ubuntu within minutes, and to maintain these servers. Optionally, instances can be pre-loaded with tools and workflows.

Detailed usage instructions are available in the Documentation.

Required Ansible version >= && <=

The playbook has been tested on

  • Cloud Machines
  • Vagrant Boxes
  • Physical Servers
  • Docker

GalaxyKickStart has been developed at the ARTbio platform and contains roles developed by the Galaxy team.

List of roles included in this playbook


Installation of postgresql might fails due to non-standard locale

If you are using Ubuntu on your Ansible machine, make sure that you deactivate SendEnv LANG LC_* in /etc/ssh_config. This will allow locale settings to be propagated by ssh.