Pinned repositories

  1. genomeview

    GenomeView is a stand-alone genome browser and editor. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many s…

    Java

  2. genometools

    GenomeTools

    Java 3

  3. atk

    Abeel Toolkit

    Java

  4. peacock

    Scala

  • Multi-reference genome browser

    Java Updated Feb 16, 2017
  • GenomeTools

    Java 3 Updated Jan 13, 2017
  • Java Machine Learning Library

    Java 1 1 Updated Jan 12, 2017
  • Updated Dec 15, 2016
  • Digital spoligotyping of MTB strains from Illumina read data

    Scala Updated Dec 14, 2016
  • Abeel Toolkit

    Java Updated Nov 4, 2016
  • Macaw is a tool to lineage-type MTB samples and to identified strain mixes in WGS data sets.

    Python 1 Updated Oct 25, 2016
  • GenomeView is a stand-alone genome browser and editor. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard file formats are supported and new functionality can be added using a plugin system.

    Java Updated Oct 11, 2016
  • Scala Updated Sep 28, 2016
  • Java 1 Updated Sep 28, 2016
  • Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

    Python 17 Updated Sep 12, 2016
  • Jupyter Notebook 1 Updated Sep 3, 2016
  • IS6110 discovery from NGS data

    Scala Updated Jun 17, 2016
  • Order and orient

    C 1 Updated Apr 13, 2016
  • Rapid TB drug resistance determination from NGS data

    Perl Updated Mar 17, 2016
  • Scala Updated Mar 15, 2016
  • Emu is a tool that canonicalizes non-identical representations of large insertions and deletions (indels) and substitutions across multiple genome samples.

    Scala Updated Feb 5, 2016
  • Java 1 Updated Aug 13, 2015
  • Approximate tree building with kmers

    Java Updated Jul 27, 2015
  • Visualization and comparison of DNA strains.

    Java 2 3 Updated Jun 30, 2015
  • Programming Life, contextproject 2015.

    Java 4 1 Updated Jun 26, 2015
  • Java 3 Updated Jun 25, 2015
  • HTML Updated Jun 25, 2015
  • Pilon is an automated genome assembly improvement and variant detection tool

    Scala 13 Updated Jun 25, 2015
  • TI2806 Contextproject

    Java 2 4 Updated Jun 25, 2015
  • Programming Life 3

    Java 2 4 Updated Jun 24, 2015