This page provides code, datasets, and instructions to run and compare algorithms for ECG QRS detection. Featured here is a version of the Pan-Tompkins algorithm by Sara Pickus and a novel algorithm by our group called, the Accyourate Modified Pan-Tompkins (AMPT).
The Pan-Tompkins:
https://pubmed.ncbi.nlm.nih.gov/3997178/
You can clone this project by running in your Terminal:
git clone https://github.com/Accyourate-Group-S-p-A/acy_ampt
To install dependencies in your Terminal use:
pip3 install -r requirements.txt
- numpy;
- pandas;
- scipy;
- matplotlib;
- wfdb;
The Dataset downoad is mandatory. You can download a .zip file containing the datasets ready to be processed by our tool from the following link: https://mega.nz/file/Q1lDRaBK#LgtQ3YkLoN-h7Zc6B5Bg-uFI0stfI1SNP2FIUm3VzDQ
After the download exctract the zip contents and place the "ECG DBs" folder into the main directory of this project.
- A1 - Physionet Challange 2014/A1 - High Quality - SET-P;
- A2 - Physionet Challange 2014/A2 - Low Quality - Training;
- B1 - MIT-BIH NSR & ARRHYTHMIA/B1 - NSR DB 1.0.0;
- B2 - MIT-BIH NSR & ARRHYTHMIA/B2 - ARRHYTHMIA DB 1.0.0;
- C - MIT-BIH Pacemaker Rhythm - part of ARRHYT DB;
- D - Harvard Telehealth DB;
python3 run.py
- Select the Dataset you would like to use;
- Select if you want to resample the ECG to 200Hz;
- Select which analysis algorhytjhm you want to use between:
- AMPT;
- PICKUS;
The results will be saved into "results" folder of this project directory as a .csv dataframe having as column:
- timing: the execution time in seconds;
- file: the name of the processed file;
- Our Peaks: peaks found by the choosen algorythm;
- Annotation Peaks: the peak count of the annotations;
- False Positive: the false positive;
- False Negative: the false negative;
- Antonio Augello
- Luca Neri
- Matt T. Oberdier
- Sujai Jaipalli